GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003754-TA|BGIBMGA003754-PA|undefined
         (182 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 127 INDENKDTRCAECSSRDTSPNGIS 150
           +++   DTR A+C+ R   P  I+
Sbjct: 34  LSEGGNDTRSADCTLRVLDPGAIT 57


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/22 (31%), Positives = 17/22 (77%)

Query: 126 SINDENKDTRCAECSSRDTSPN 147
           ++N+  K+TRCA+ ++++ + N
Sbjct: 407 NVNNLIKNTRCAKSNNQNNNQN 428


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 126 SINDENKDTRCAECSSRDTSPN 147
           ++ND   +TRCA   +++ + N
Sbjct: 573 NVNDLIMNTRCANSDNQNNNQN 594


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,641
Number of Sequences: 429
Number of extensions: 1799
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 182
length of database: 140,377
effective HSP length: 54
effective length of query: 128
effective length of database: 117,211
effective search space: 15003008
effective search space used: 15003008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)