GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003752-TA|BGIBMGA003752-PA|IPR000008|C2
calcium-dependent membrane targeting, IPR008973|C2
calcium/lipid-binding region, CaLB
         (171 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   1.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   2.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   4.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   4.9  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 104 RWYKLQGKSGKENDKDRGEIE 124
           R Y+  GK+ KE  +DR E E
Sbjct: 276 REYRKYGKTSKERSRDRMERE 296


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 4/31 (12%)

Query: 118 KDRGEIEVKIAFTVKEGSLTDLSKKDKHRSS 148
           K+RGEIEVK    +K    T   +K +HRSS
Sbjct: 577 KERGEIEVKGKGIMK----TYWLEKREHRSS 603



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 36  KEKFQTSVKHKATQNVEWLEECE 58
           KE+ +  VK K      WLE+ E
Sbjct: 577 KERGEIEVKGKGIMKTYWLEKRE 599


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 35  GKEKFQTSVKHKATQNVEWLEECELPIPTQGNT 67
           GKE +QT  +  A    +W +       +  NT
Sbjct: 404 GKENYQTMSRDPARTPFQWDDSVSAGFSSSSNT 436


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 35  GKEKFQTSVKHKATQNVEWLEECELPIPTQGNT 67
           GKE +QT  +  A    +W +       +  NT
Sbjct: 404 GKENYQTMSRDPARTPFQWDDSVSAGFSSSSNT 436


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,866
Number of Sequences: 429
Number of extensions: 2016
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 171
length of database: 140,377
effective HSP length: 54
effective length of query: 117
effective length of database: 117,211
effective search space: 13713687
effective search space used: 13713687
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)