GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003751-TA|BGIBMGA003751-PA|IPR005121|Ferredoxin-fold
anticodon-binding
         (229 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    27   2.3  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   4.0  
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    25   7.0  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   9.3  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   9.3  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    25   9.3  

>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 124 DMTSYYENRAGPSNFGNVISQILLCKQITPDFNQEELCSIAKDTQE 169
           D   +++N  G  +F + + ++ L K++    N+E      +DT+E
Sbjct: 87  DAFEFFKNLFGGDSFRDYVGELNLLKELCKMINEEPELKAIEDTEE 132


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 99  LLYFMSQLLLRELAKCHRLVQL--VPMDMTSYYENRAGPSNFGNVISQ 144
           L+YF SQL    L  C+  V L   P     +Y         GN+IS+
Sbjct: 436 LIYFASQLCRLTLPLCYNFVSLQPYPTQFHQFYGESIDLLPLGNLISK 483


>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 183 QHENLNHLETTVALKGDDVNGLWRNKRRGSLYKGMGVLC 221
           Q  N  H +TTV L+G ++NG          Y G  VLC
Sbjct: 45  QISNNTHSKTTVCLRGRELNG--EELDLPENYTGQVVLC 81


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 173 IVNDIQEYLPQHENLNHLETTVALKGDDVNGLWRNKRR 210
           + +D  E LPQ +    +   + +  DD NGL   K+R
Sbjct: 156 VKDDANEMLPQLKGPKDIFNKMVVFDDDTNGLEEAKKR 193


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 179 EYLPQHENLNHLETTVALKGDDVNGLWRNKRRGSLYK 215
           E L ++  +N+ +  V +KG +   +++N   GSL++
Sbjct: 254 EQLHRNVKINYKDELVEVKGSERKAVFKNLNDGSLFE 290


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/39 (38%), Positives = 18/39 (46%)

Query: 182 PQHENLNHLETTVALKGDDVNGLWRNKRRGSLYKGMGVL 220
           PQ + + HLET+  L G  VN   R    G    G G L
Sbjct: 176 PQPQAIMHLETSSNLTGVTVNPFNRKLTPGGSSGGEGAL 214


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 982,790
Number of Sequences: 5004
Number of extensions: 36597
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 6
length of query: 229
length of database: 2,362,478
effective HSP length: 70
effective length of query: 159
effective length of database: 2,012,198
effective search space: 319939482
effective search space used: 319939482
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)