GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003743-TA|BGIBMGA003743-PA|undefined
         (168 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        26   0.17 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   2.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.4  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 18 GTVNGIGAAPRTATLGTPSSYAYTXXXXXXXXXXXARPVPPPTLPKYSGS 67
          GT+     +P TA+L +  S A               P P  + P++SGS
Sbjct: 25 GTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGS 74


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 54  RPVPPPTLPKYSGSFSA 70
           +P PPP  P  SG  SA
Sbjct: 340 KPAPPPPPPSSSGPDSA 356


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 15  GPGGTVNGIG 24
           G GGT++GIG
Sbjct: 215 GTGGTISGIG 224


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.125    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,065
Number of Sequences: 429
Number of extensions: 1461
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 168
length of database: 140,377
effective HSP length: 53
effective length of query: 115
effective length of database: 117,640
effective search space: 13528600
effective search space used: 13528600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)