GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003739-TA|BGIBMGA003739-PA|IPR003663|Sugar transporter,
IPR005829|Sugar transporter superfamily, IPR005828|General substrate
transporter, IPR007114|Major facilitator superfamily
         (591 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    27   0.58 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   2.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   5.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   9.4  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 0.58
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 540 LWLFAVICIGGLLFVIFFVPETKGKSLEEIEMKLTSGSRR---VRNISKQPE 588
           LW+F + C  G L +IF  P     + E ++ +L+  S R     NI   PE
Sbjct: 486 LWVFTLACTAGTLGIIFQAPSLY-DTREPVDQQLSGISPRNYMYPNIDISPE 536


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 540 LWLFAVICIGGLLFVIFFVP 559
           LW+F V C+ G + +I   P
Sbjct: 551 LWIFTVACVLGTVLIILQAP 570


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 17  YLKQLSTEMGGSEQTRHAQGDE 38
           Y+  L  E+GG    + AQGDE
Sbjct: 625 YVDNLLGELGGERLLKLAQGDE 646


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 354 DRTGGNAFKQLFSKRYLPAVMIS 376
           D+TGG+A K L     L A+++S
Sbjct: 211 DKTGGSAKKSLTEYNNLKAMVVS 233


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,710
Number of Sequences: 429
Number of extensions: 6218
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 5
length of query: 591
length of database: 140,377
effective HSP length: 61
effective length of query: 530
effective length of database: 114,208
effective search space: 60530240
effective search space used: 60530240
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)