GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003735-TA|BGIBMGA003735-PA|IPR009057|Homeodomain-like
         (65 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           18   8.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           18   8.5  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 30 VSLSTVQRVRGRYEETVSN 48
          V +S   RVRG     VSN
Sbjct: 21 VMVSNSDRVRGNGNAIVSN 39


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 18.2 bits (35), Expect = 8.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 30 VSLSTVQRVRGRYEETVSN 48
          V +S   RVRG     VSN
Sbjct: 22 VMVSNSDRVRGNGNAIVSN 40


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.129    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9636
Number of Sequences: 429
Number of extensions: 164
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 65
length of database: 140,377
effective HSP length: 44
effective length of query: 21
effective length of database: 121,501
effective search space:  2551521
effective search space used:  2551521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)