GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003731-TA|BGIBMGA003731-PA|IPR005821|Ion transport,
IPR013821|KCNQ voltage-gated potassium channel, C-terminal,
IPR003091|Voltage-dependent potassium channel, IPR003937|KCNQ
voltage-gated potassium channel
         (802 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   3.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   4.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   9.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   9.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   9.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 243 LAEKDVADTKFKNFAEALW--WGVITLCTVGYGDMVPQTWQGKFI----ASFCALLGISF 296
           LA  D  +    N + A+W  WGV  L   G G+  P+++  + +    A F  ++  S+
Sbjct: 597 LANTDGTEEDALNLSSAVWFAWGV--LLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASY 654

Query: 297 FALPAGIL 304
            A  A  L
Sbjct: 655 TANLAAFL 662


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 5/136 (3%)

Query: 313 QQQQRQKHMIRRRQPAATLIQALWRCYAADEHSMSVATWKIHQIPLPS--PQTSRVMSAS 370
           QQQQ+ +H+I  +QP     Q   +     +       W + + P  S    +   +  +
Sbjct: 426 QQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASWGSASDVTLDEA 485

Query: 371 FKNNASFVSRLPTIRRHKTTSL---HSPAPHSKPAHRYDVNASAENLGATNGRTMRTRPV 427
            K+    VS   +    +  SL   H  AP S          +A   G       R    
Sbjct: 486 VKSPLGSVSSTESTCSGEVASLTEYHHVAPPSGHHASSAPLLAATLAGGLCPHRRRANSG 545

Query: 428 NPSQSEDSVAETALSK 443
           + S  +D +   +LSK
Sbjct: 546 STSSGDDELHRASLSK 561



 Score = 24.2 bits (50), Expect = 4.2
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 306 SGFALKVQQQQRQKHMIRRRQPAATLIQALWRCYAADEHSMSVATWKIHQIPLPSPQTSR 365
           +G   + QQQQ+Q+   +++Q ++  +       ++  +  + AT      P P+  T+ 
Sbjct: 791 TGARQQQQQQQQQQQQQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAA 850

Query: 366 --VMSASFKNNASFVSRLPTIRRHKTTSLHSPAPHSKP 401
             V+S    N       +   ++    S  SP+P  +P
Sbjct: 851 TLVLSGCPSNMMELQVDIADSQQPLNLSKKSPSPSPRP 888


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 254 KNFAEALWWGVITLCTVGYGDMVPQTWQGKFIASFCALLGISFFALPAG 302
           + ++ AL+  +  +  +GYG   PQ+    ++     + G + +AL  G
Sbjct: 324 EQYSWALFKAMSHMLCIGYGRFPPQSLTDMWLTMLSMISGATCYALFLG 372


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 254 KNFAEALWWGVITLCTVGYGDMVPQTWQGKFIASFCALLGISFFALPAG 302
           + ++ AL+  +  +  +GYG   PQ+    ++     + G + +AL  G
Sbjct: 292 EQYSWALFKAMSHMLCIGYGRFPPQSLTDMWLTMLSMISGATCYALFLG 340


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 7/45 (15%)

Query: 117 LFYMETVVVVWFAIEFILRLWSSGCRSRYQGSIGRLKFLRRPFCI 161
           L+Y +     WF I       S+GC SR    I R + L R  CI
Sbjct: 15  LYYHQRCSRDWFRI-------SAGCVSRISNRISRNRVLLRGQCI 52


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,223
Number of Sequences: 429
Number of extensions: 8173
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 7
length of query: 802
length of database: 140,377
effective HSP length: 63
effective length of query: 739
effective length of database: 113,350
effective search space: 83765650
effective search space used: 83765650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)