GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003723-TA|BGIBMGA003723-PA|IPR008985|Concanavalin A-like
lectin/glucanase, IPR001438|EGF-like, type 2, IPR006210|EGF,
IPR001881|EGF-like calcium-binding, IPR006209|EGF-like,
IPR000152|Aspartic acid and asparagine hydroxylation site,
IPR013032|EGF-like region, IPR000742|EGF-like, type 3
         (569 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    32   0.015
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   2.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   5.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   9.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 31.9 bits (69), Expect = 0.015
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 242 SCMSMAVNGTTSFHCACPDGWTGARCEFSMIGGACTSNPCV--KGICIEQIDGDVEEPDY 299
           SC  ++VN   +   A P G   A  E ++  G C +N  V  +   + + DG    P  
Sbjct: 190 SCPEISVN--FAHFPATPTGREVALIEQTI--GTCVANAVVIEQPTFLCKGDGKWYLPSG 245

Query: 300 KCFCQPGYTGEQCELEYNECESSPCG 325
            C C+PGY   Q ++E  EC   P G
Sbjct: 246 GCHCKPGY---QADVEKQECTECPIG 268


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 48   ALVQNQLKNDTLGTNTSLADGERVHRALTQ 77
            AL+ NQ + D+L    SL D + + +  TQ
Sbjct: 1628 ALISNQCEGDSLNVAKSLQDHDCIRQERTQ 1657


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
          acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 32 SGDILIVRIVDSLLLDALVQNQLKNDTLGTNTSLADGERVHRALTQPAVY 81
          + D ++V++   L L  L+   LK+  L TN  L    + H+    PA Y
Sbjct: 42 NNDTVVVKL--GLRLSQLIDLNLKDQILTTNVWLEHEWQDHKFQWDPAEY 89


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/27 (37%), Positives = 11/27 (40%)

Query: 172 CQCCSGFVGPHCEDRDSCNPSPCLNSG 198
           C CC G V    +    C PS    SG
Sbjct: 406 CACCPGRVRRRYQPAFRCKPSQRFASG 432


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,860
Number of Sequences: 429
Number of extensions: 8102
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 569
length of database: 140,377
effective HSP length: 61
effective length of query: 508
effective length of database: 114,208
effective search space: 58017664
effective search space used: 58017664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)