GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003718-TA|BGIBMGA003718-PA|IPR006634|TRAM, LAG1 and CLN8
homology, IPR013599|TRAM1-like protein, IPR005547|Longevity-assurance
protein (LAG1)
         (378 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.81 

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.81
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 18  FSHEFVIQNHADIVSCVVMVFLVGLMVQSTSPIASLFISLHHNVSGVEPTREAPKGEPFT 77
           F+H     NH  ++ CV    + G++V S    A  +  L   V G   +        + 
Sbjct: 297 FAHPREEFNHWTVMRCV-QAMIAGIVVISAG--ADAYPPLAAIVLGAIGSIVFYIISRYV 353

Query: 78  YESGWKDACAVFFYSLVCIVMHAILQEYF 106
           + S  +D C +    LVC ++ +IL  +F
Sbjct: 354 FRSALEDYCNIVATHLVCGILGSILVPFF 382



 Score = 21.8 bits (44), Expect = 9.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 81  GWKDACAVFFYSLVCIVMH 99
           GW+  C +   +LV I+M+
Sbjct: 398 GWQMICLIVVIALVSIIMY 416


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.140    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,379
Number of Sequences: 429
Number of extensions: 3380
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 378
length of database: 140,377
effective HSP length: 59
effective length of query: 319
effective length of database: 115,066
effective search space: 36706054
effective search space used: 36706054
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)