GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003713-TA|BGIBMGA003713-PA|IPR010326|Exocyst complex
component Sec6
         (83 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   1.2  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   1.5  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   1.5  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   1.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   4.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   4.7  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    19   8.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   8.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   8.3  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 28  QLEKVEHY--KKRITHKKAS-IEAQLKS-AVQGKLDGVSVGLKQLQECLDDVQE 77
           QL+K E+   K+ I    A   E++  +  V+G   G SVGLK   +  DDV E
Sbjct: 260 QLKKEEYKSGKRNIIDNSAQKTESKTNNIVVEGVSFGQSVGLKDDLDIDDDVGE 313


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 42  KKASIEAQLKSAVQGKLDGVSVGLKQLQECLDDVQEISKKY 82
           KKAS + +          G+  G K L+E LD++++ + ++
Sbjct: 98  KKASFDDEYYKRAPMGFQGMR-GKKSLEEILDEIKKKTTRF 137


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 42  KKASIEAQLKSAVQGKLDGVSVGLKQLQECLDDVQEISKKY 82
           KKAS + +          G+  G K L+E LD++++ + ++
Sbjct: 98  KKASFDDEYYKRAPMGFQGMR-GKKSLEEILDEIKKKTTRF 137


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 42  KKASIEAQLKSAVQGKLDGVSVGLKQLQECLDDVQEISKKY 82
           KKAS + +          G+  G K L+E LD++++ + ++
Sbjct: 98  KKASFDDEYYKRAPMGFQGMR-GKKSLEEILDEIKKKTTRF 137


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 34  HYKKRITHKKA 44
           HY+K  THK A
Sbjct: 323 HYRKPSTHKMA 333


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 7/21 (33%), Positives = 16/21 (76%)

Query: 62  SVGLKQLQECLDDVQEISKKY 82
           +V LK+L+  L+D++ I+ ++
Sbjct: 208 NVKLKELRIILEDIKHINTRH 228


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 28 QLEKVEHYKKRITHKK 43
          +LEK  HY + +T ++
Sbjct: 22 ELEKEFHYNRYLTRRR 37


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 35  YKKRITHKKASIEAQLKSAVQGKL 58
           ++K+I +   ++ AQ+ +  QG L
Sbjct: 972 HQKKIMNSVTALRAQMSATSQGFL 995


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 28  QLEKVEHYKKRITHKK 43
           +LEK  HY + +T ++
Sbjct: 284 ELEKEFHYNRYLTRRR 299


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.128    0.336 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,010
Number of Sequences: 429
Number of extensions: 383
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 83
length of database: 140,377
effective HSP length: 47
effective length of query: 36
effective length of database: 120,214
effective search space:  4327704
effective search space used:  4327704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.7 bits)
S2: 37 (19.0 bits)