GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003712-TA|BGIBMGA003712-PA|undefined
         (236 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    27   0.20 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   0.61 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   0.61 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   0.61 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.80 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.80 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.9  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 58  LARFRKMTENLNKPTVLTQSSGSIAFGARISLLAPH--VPASDPPVEGKNGLLLGGRISS 115
           LAR   +  +L++ ++ +  S     G   S++ P   V     PV  K G   G  + +
Sbjct: 20  LARMLALLVSLHRLSIYSGGSDWRVAGRSESVVIPGDIVLGGLFPVHEKGGASCGPNVYN 79

Query: 116 NDIIRSQVLIDGCSLVGMP-DLKPVESSTFVITSADYCNREGEPLKYNQEFLLALSSSLD 174
             + R + ++     +    D+ P    T  +   D C R+   L  +  F+ A  S+LD
Sbjct: 80  RGVQRLEAMLFAVDQINRDEDILP--GITIGVHILDTCGRDTYALNQSLHFVRASLSNLD 137

Query: 175 KKVNE 179
             V E
Sbjct: 138 MSVLE 142


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 162 NQEFLLALSSSLDKKVNED 180
           N+E++L LS+ + K VN D
Sbjct: 374 NREYILVLSNKMQKMVNND 392


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 162 NQEFLLALSSSLDKKVNED 180
           N+E++L LS+ + K VN D
Sbjct: 374 NREYILVLSNKMQKMVNND 392


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 162 NQEFLLALSSSLDKKVNED 180
           N+E++L LS+ + K VN D
Sbjct: 374 NREYILVLSNKMQKMVNND 392


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 164 EFLLALSSSLDKKVNEDVVVNHCATNVNLGINV 196
           E++LALS+ + K +N D   N     + LG NV
Sbjct: 379 EYMLALSNRMQKIINNDFNFNDVNFRI-LGANV 410


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 164 EFLLALSSSLDKKVNEDVVVNHCATNVNLGINV 196
           E+++ALS  L K +N D   N     + LG NV
Sbjct: 543 EYMMALSMKLQKFINNDYNFNEVNFRI-LGANV 574


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 161 YNQEFLLALSSSLDKKVNEDVVVNHCATNVNLGINV 196
           +  E++LALS+ + K VN D   +     + LG NV
Sbjct: 374 HKNEYMLALSNRMQKIVNNDFNFDEVNFRI-LGANV 408


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 64  MTENLNKPTVLTQSSGSIAFGARISLLAPHVPASDPPVEGKNG 106
           MT +   P +  ++S S A G  I  +  + PAS P    KNG
Sbjct: 859 MTNDDFNPNIEEEASDS-AQGRAILKIPSYKPASTPGCSSKNG 900


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 164 EFLLALSSSLDKKVNEDVVVNHCATNVNLGINV 196
           E+LLALS      +N D+ + H    + LG NV
Sbjct: 374 EYLLALSDRNQNVLNNDLNLEHVNFQI-LGANV 405


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 190 VNLGINVGCWAMGFYGKICAPIMKTCLDVYGRELPNNVWQIYT 232
           V +G+ + CW   F   I     KTC+   GR      W  Y+
Sbjct: 276 VIMGVFLICWVPFFCVNIVTSYCKTCIS--GRAFQVLTWLGYS 316


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 150 DYCNREGEPLKYNQEFLLALSSSLDKKVNE 179
           D C R+   L  +  F+ A  S+LD  V E
Sbjct: 23  DTCGRDTYALNQSLHFVRASLSNLDMSVLE 52


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 84  GARISLLAPHVPASDPPVEGKNGLLLGGRI 113
           G +I    PH   S+ PV+ +  L+L  R+
Sbjct: 354 GMKIKEELPHFVGSNKPVKDEYMLVLSNRM 383


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,156
Number of Sequences: 429
Number of extensions: 2881
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 12
length of query: 236
length of database: 140,377
effective HSP length: 56
effective length of query: 180
effective length of database: 116,353
effective search space: 20943540
effective search space used: 20943540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)