GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003710-TA|BGIBMGA003710-PA|undefined
         (228 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   2.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.1  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 13 FENDDGEGITVNGERYRSMINNLFWPELNDMD 44
          +E  DG+ IT+  ER+R     LF P    M+
Sbjct: 15 YELPDGQVITIGNERFRCP-EALFQPSFLGME 45


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl
          cyclase beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 81 LIAYLAKKGIQSLGMVNK 98
          LI  LAKK IQ LG+  K
Sbjct: 46 LIPRLAKKAIQVLGVTEK 63


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 149 RPSSYVDQEPIETARRYCKKQKEHIQVDFSQTIKTKPEYEWCG 191
           + S  +    I+T  +       H QV+ S  IK    + W G
Sbjct: 667 KASDKLKDSRIKTTEKLSTDPNTHFQVNQSHGIKRSGSHSWEG 709


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,291
Number of Sequences: 429
Number of extensions: 2946
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 228
length of database: 140,377
effective HSP length: 56
effective length of query: 172
effective length of database: 116,353
effective search space: 20012716
effective search space used: 20012716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)