GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003708-TA|BGIBMGA003708-PA|IPR003590|Leucine-rich
repeat, ribonuclease inhibitor subtype
         (446 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        26   0.56 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        26   0.56 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        26   0.56 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   9.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.56
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 25  DLISENKESADWEEWAENLTNVAA 48
           DL+S NK    W +W E   N  A
Sbjct: 688 DLVSVNKSWNKWNDWQETQNNYGA 711


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.56
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 25  DLISENKESADWEEWAENLTNVAA 48
           DL+S NK    W +W E   N  A
Sbjct: 688 DLVSVNKSWNKWNDWQETQNNYGA 711


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.56
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 25  DLISENKESADWEEWAENLTNVAA 48
           DL+S NK    W +W E   N  A
Sbjct: 688 DLVSVNKSWNKWNDWQETQNNYGA 711


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 253 PSDPLLAIPNKQLCQLWGDMLGALLNCCCKRKSFLQSMSKQLPDFVIVALCE 304
           PSD L  I   +L   + D L  +L+C  +        S++ P   ++A  E
Sbjct: 284 PSDKLSKIQTLKLATRYIDFLFQVLHCNMENTEGADDASERNPRSAVLAARE 335


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,330
Number of Sequences: 429
Number of extensions: 4002
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 446
length of database: 140,377
effective HSP length: 60
effective length of query: 386
effective length of database: 114,637
effective search space: 44249882
effective search space used: 44249882
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)