GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003706-TA|BGIBMGA003706-PA|undefined
         (208 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 16   QDKKVDMNSNENDALNNEVK 35
            +DK V + S EN+A   EVK
Sbjct: 1490 KDKSVSVLSRENEAGQKEVK 1509


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
          protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 71 ALRDFLGSSNTVLSDEASEGE 91
          ALR  LG+S  + +D  SE E
Sbjct: 59 ALRTELGASTKLATDTTSENE 79


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 23  NSNENDALNNEVKDEANG 40
           N+N N+  NN   D  NG
Sbjct: 243 NNNNNNNNNNGANDNGNG 260


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 16  QDKKVDMNSNENDALNNEVKDEANGTIQ 43
           ++K+ + N N   A+N  VK +  G+++
Sbjct: 465 EEKRKNKNKNLTPAVNIIVKGDVAGSVE 492


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 27  NDALNNEVKDEANGTIQEKYISSDKTLDSDSTP 59
           ND  N  +++EA+ + Q + I    +    STP
Sbjct: 861 NDDFNPNIEEEASDSAQGRAILKIPSYKPASTP 893


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.128    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,476
Number of Sequences: 429
Number of extensions: 2526
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 208
length of database: 140,377
effective HSP length: 55
effective length of query: 153
effective length of database: 116,782
effective search space: 17867646
effective search space used: 17867646
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 42 (21.0 bits)