GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003702-TA|BGIBMGA003702-PA|undefined
         (640 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   1.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   3.3  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 219 QKQLQTLIYLEGTDPSQLLIKTLSAGVIINTHG--GKLTTLPIEMINQIM 266
           Q Q  TL+Y +GT+   +++  ++ G++    G  GKL      ++N+I+
Sbjct: 226 QIQEATLVYKDGTNVMGMIVFCITFGLVAGQFGAQGKLIVDFFMILNEII 275


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 134 IPDPISKSRDEDIDTFVQCVNLLLNLCES 162
           IPD +  ++D DI TFV     +  +C +
Sbjct: 77  IPDVVEAAKDADILTFVVPHQFIKRICSA 105


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,682
Number of Sequences: 429
Number of extensions: 5959
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 640
length of database: 140,377
effective HSP length: 62
effective length of query: 578
effective length of database: 113,779
effective search space: 65764262
effective search space used: 65764262
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)