GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003700-TA|BGIBMGA003700-PA|IPR001715|Calponin-like
actin-binding, IPR000048|IQ calmodulin-binding region, IPR001936|Ras
GTPase-activating protein, IPR000593|RasGAP protein, C-terminal,
IPR011575|RasGAP, IPR008936|Rho GTPase activation protein
         (1643 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    30   0.18 
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    28   0.72 
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    28   0.72 
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   6.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   8.9  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 179 DELDVVSKDLQKCEQPMPMFQKIGGILSINNKGDGSVMLKALIELNRLLDTEKSITAAIL 238
           D+  ++ ++   C++ M M +     L + +  D ++ +K +I LN+L       T+ ++
Sbjct: 378 DKQSLLKENTVTCQEAMHMLKNADSQLLVIS--DDNIHIKGVISLNKL-------TSYVI 428

Query: 239 NPQLKLKH-VQNRLIDEYKKALHIAKQDKIQAAHNRSLNDSYLPDEYDELLTTVEIQGHI 297
           +  +K    V   ++ +Y K  H A    I     +      L DE+D+    +  Q HI
Sbjct: 429 SGIVKCTDFVDKAMVKQYVKVKHSATLGYISRVLEKEPYVIILDDEHDDAFIGIVNQFHI 488


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
            ASP4 protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 1382 ELCV-AILPYLNGEHL-LEALVIGTTKEQQEQYAQKIQKRIYSGQSK---QDEAMTLREH 1436
            E CV   L +++G  L +E L  GT +   + + + + + I    SK   +DE M  R++
Sbjct: 56   EACVFQKLHFMDGNTLNVEKLESGTRELTPDDFTEDVHEIIEQCVSKAADEDECMVARKY 115

Query: 1437 ISKLRRNLQMLEDE 1450
            I      ++ L+DE
Sbjct: 116  IDCALEKMKFLDDE 129


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
            ASP4 protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 1382 ELCV-AILPYLNGEHL-LEALVIGTTKEQQEQYAQKIQKRIYSGQSK---QDEAMTLREH 1436
            E CV   L +++G  L +E L  GT +   + + + + + I    SK   +DE M  R++
Sbjct: 56   EACVFQKLHFMDGNTLNVEKLESGTRELTPDDFTEDVHEIIEQCVSKAADEDECMVARKY 115

Query: 1437 ISKLRRNLQMLEDE 1450
            I      ++ L+DE
Sbjct: 116  IDCALEKMKFLDDE 129


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 319 KSLHKIFTEEWVHIKGYDHHNLDFYCDVVQETIECNKDIDVESVPNWHKIFQNIINEGNR 378
           K L +I  E   ++K    H L      + + +E  KD D+ +    H+  + I +    
Sbjct: 49  KKLTEIINETHENVKYLPGHKLPPNIIAIPDVVEAAKDADILTFVVPHQFIKRICSALFG 108

Query: 379 KSLEHTDHKSAIANVNKVLEEGSPTDLYKALINPHLELNIKV 420
           K        S I   +K  ++G   +L   +I+  L + + V
Sbjct: 109 KIKPTAIGLSLIKGFDK--KQGGGIELISHIISKQLHIPVSV 148


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 141 KKNMPRVIYCIHALSSHLFKLGKAPLIHDVFGKIAFTDDELDVVSKDLQ 189
           K  M   +  + A +     +G  P++    G+ A+T++EL    +D+Q
Sbjct: 556 KPRMSGPVAAVAAAAVAAAGVGGVPVVGAGGGRRAYTEEELQAALRDIQ 604


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,875
Number of Sequences: 429
Number of extensions: 19011
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 6
length of query: 1643
length of database: 140,377
effective HSP length: 67
effective length of query: 1576
effective length of database: 111,634
effective search space: 175935184
effective search space used: 175935184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)