GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003694-TA|BGIBMGA003694-PA|IPR000863|Sulfotransferase
         (425 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    26   0.69 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   6.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   8.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   8.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   8.6  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 136 VGISIWGLA-SRAKGAKILKFKEEDKRK----YKQIITPGCELLAAASDPRFIKTHLPMC 190
           VG   WG   ++  G     F   + R     Y++II  G +L    ++      +LP  
Sbjct: 10  VGSGNWGSTIAKIIGINAANFSNFEDRVTMYVYEEIIN-GKKLTEIINETHENVKYLPGH 68

Query: 191 MLPPNLIETAKIVYVARD 208
            LPPN+I    +V  A+D
Sbjct: 69  KLPPNIIAIPDVVEAAKD 86


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 191 MLPPNLIETAKIVYVARDPRDVVVSLYHFYRLMPVPQF 228
           ++PP ++E + +V+VA+D      SL    +  P P++
Sbjct: 235 VMPPVILENSGVVHVAQDES---TSLVCVAQACPTPEY 269



 Score = 22.6 bits (46), Expect = 6.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 146 RAKGAKILKFKEEDKRKYKQIITPGCELLAAASDPR 181
           +A G+K  +++E  +R Y +I++ G  LL    + R
Sbjct: 745 KATGSKSGEYEELRERAYTKILSNGTLLLQHVKEDR 780


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 191 MLPPNLIETAKIVYVARDPRDVVVSLYHFYRLMPVPQF 228
           ++PP ++E + +V+VA+D      SL    +  P P++
Sbjct: 235 VMPPVILENSGVVHVAQDES---TSLVCVAQACPTPEY 269



 Score = 22.6 bits (46), Expect = 6.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 146 RAKGAKILKFKEEDKRKYKQIITPGCELLAAASDPR 181
           +A G+K  +++E  +R Y +I++ G  LL    + R
Sbjct: 741 KATGSKSGEYEELRERAYTKILSNGTLLLQHVKEDR 776


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 272 QPRHGRWSQWRRARKMDLLPFIRTPY 297
           Q R  +W +  +   M+++P+  +PY
Sbjct: 57  QNRRMKWKKEHKMASMNIVPYHMSPY 82


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 341 TDEQISVLCNHLNINNFRHNDSVSLNFLADVFIPGEEP 378
           ++  IS + N+ N NN+      ++N++  + +P   P
Sbjct: 86  SNNYISNISNYNNNNNYNKKLYYNINYIEQIPVPVPVP 123


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 341 TDEQISVLCNHLNINNFRHNDSVSLNFLADVFIPGEEP 378
           ++  IS + N+ N NN+      ++N++  + +P   P
Sbjct: 86  SNNYISNISNYNNDNNYNKKLYYNINYIEQIPVPVPVP 123


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 341 TDEQISVLCNHLNINNFRHNDSVSLNFLADVFIPGEEP 378
           ++  IS + N+ N NN+      ++N++  + +P   P
Sbjct: 324 SNNYISNISNYNNNNNYNKKLYYNINYIEQIPVPVPVP 361


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,260
Number of Sequences: 429
Number of extensions: 5677
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 9
length of query: 425
length of database: 140,377
effective HSP length: 60
effective length of query: 365
effective length of database: 114,637
effective search space: 41842505
effective search space used: 41842505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 45 (22.2 bits)