GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003692-TA|BGIBMGA003692-PA|undefined
         (197 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    26   0.28 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.8  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 6   VRHFRDKAHIYKFRTTTFGPSVYRAIS-SARWKIFPLSLISSKLRIKNFGYHNPRILADK 64
           + H      +Y+ +T  +   ++  I+    ++++P+ +    + I++F YH  ++    
Sbjct: 89  LNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMDIQICPIYIESFSYHKQKLRLRW 148

Query: 65  ST-SLTVVPQ 73
            T ++TV P+
Sbjct: 149 GTGAVTVNPE 158


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 57  NPRILADKSTSLTVVPQQASIAASTGPSQPN 87
           NPRI +  S+S +  P     AA+  PS+ N
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSKRN 544


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 65  STSLTVVPQQASIAASTGPSQPNHRASWSYGTQLHWLITPLQFIADHDR 113
           S + T  P Q     S   +  N    W +  +++  I  ++FIADH +
Sbjct: 447 SPATTAAPPQLPTEESVD-ALCNTLHHWHHCPEIYKAIEGIRFIADHTK 494


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 8   HFRDKAHIYKFRTTTFGPSVYRAISS 33
           HF+  A   KF +  FG ++ R I +
Sbjct: 445 HFKQIARAVKFTSKLFGRALSRRIKA 470


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 70  VVPQQASIAASTGPSQPNHRASWSYGTQLHWL 101
           + P   +I  S      N++  W Y   + WL
Sbjct: 549 IYPASMTIPGSNSAVFTNYKLYWRYWQGVDWL 580


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.129    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,033
Number of Sequences: 429
Number of extensions: 1765
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 197
length of database: 140,377
effective HSP length: 55
effective length of query: 142
effective length of database: 116,782
effective search space: 16583044
effective search space used: 16583044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)