GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003690-TA|BGIBMGA003690-PA|IPR013594|Dynein heavy chain,
N-terminal region 1, IPR013602|Dynein heavy chain, N-terminal region
2, IPR011704|ATPase associated with various cellular activities,
AAA-5, IPR004273|Dynein heavy chain, IPR006141|Protein splicing
(intein) site, IPR003593|AAA ATPase
         (3280 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    27   2.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    26   5.9  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    26   5.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   7.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 8/155 (5%)

Query: 659 MKDRHWKRLEKLMNCILDVESESFTLANVM----EAPLLKYKE-DVEDICISAVKEKDIE 713
           M D H+  L+   NC +++ES  +T+ +V+    E P+   +E ++    I   +  D +
Sbjct: 162 MMDLHYYPLDS-QNCTVEIESYGYTVLDVVMYWKETPVRGVEEAELPQFTIIGYETNDRK 220

Query: 714 AKLKQVIADWAVIDLTFAPFKNRGELLVKPQETLDIITLLEDSLMILNSLASNRYNAPFK 773
            KL   I  +  + L+F   +N G  + +      +I +L      +N  A++   A   
Sbjct: 221 EKLATGI--YQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGI 278

Query: 774 KDILLWINKLVGTAEILEKWLQVQNLWMYLEAVFV 808
             +L       G    L +   V+ + +YL   FV
Sbjct: 279 TTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFV 313


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin protein.
          Length = 339

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 2835 GLMRTYDSMSQDFLDYSDSPF 2855
            GL R  D+   D+LDY+ +PF
Sbjct: 213  GLQRKKDTTFDDYLDYAINPF 233


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 2835 GLMRTYDSMSQDFLDYSDSPF 2855
            GL R  D+   D+LDY+ +PF
Sbjct: 213  GLQRKKDTTFDDYLDYAINPF 233


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 832  KIMYRARDIVNCVETCTCDDT-LKQLLPHLYEQLEACQK 869
            KI +  R +V+C   CT  +T  K    H  E+ EA  K
Sbjct: 1700 KICFTMRPVVSCASGCTAVETKSKPYKFHCMEKNEAAMK 1738


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 911,006
Number of Sequences: 429
Number of extensions: 40132
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 6
length of query: 3280
length of database: 140,377
effective HSP length: 71
effective length of query: 3209
effective length of database: 109,918
effective search space: 352726862
effective search space used: 352726862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)