GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003684-TA|BGIBMGA003684-PA|IPR002110|Ankyrin,
IPR007043|Glutaminase, IPR012338|Penicillin-binding protein,
transpeptidase fold
         (521 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.66 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.66 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   1.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   1.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   1.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   6.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   6.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   6.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 132 VVHNYVGTEPSG-RNFNELILDYNMKPHNPMINAGAIL-VCSLLK 174
           VVH  V   P   R +++L+ +YN K   P++N   +L VC  LK
Sbjct: 18  VVHGAVAGNPDAKRLYDDLLSNYN-KLVRPVVNTSDVLRVCIKLK 61


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 132 VVHNYVGTEPSG-RNFNELILDYNMKPHNPMINAGAIL-VCSLLK 174
           VVH  V   P   R +++L+ +YN K   P++N   +L VC  LK
Sbjct: 18  VVHGAVAGNPDAKRLYDDLLSNYN-KLVRPVVNTSDVLRVCIKLK 61


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 269 GGICPITDEKVLRPDSVRNVLSLMHSCGMYDY 300
           G +C  T   +LR +S+   L ++H    +DY
Sbjct: 11  GIVCQGTTGNILRGESLNKSLPILHEWKFFDY 42


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 269 GGICPITDEKVLRPDSVRNVLSLMHSCGMYDY 300
           G +C  T   +LR +S+   L ++H    +DY
Sbjct: 11  GIVCQGTTGNILRGESLNKSLPILHEWKFFDY 42


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 269 GGICPITDEKVLRPDSVRNVLSLMHSCGMYDY 300
           G +C  T   +LR +S+   L ++H    +DY
Sbjct: 11  GIVCQGTTGNILRGESLNKSLPILHEWKFFDY 42


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 58  DIEEMYWAAKSNTDGKNASY 77
           D E+MY A K N    NA Y
Sbjct: 86  DPEDMYLAVKDNKLASNAGY 105


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 58  DIEEMYWAAKSNTDGKNASY 77
           D E+MY A K N    NA Y
Sbjct: 86  DPEDMYLAVKDNKLASNAGY 105


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 58  DIEEMYWAAKSNTDGKNASY 77
           D E+MY A K N    NA Y
Sbjct: 86  DPEDMYLAVKDNKLASNAGY 105


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,436
Number of Sequences: 429
Number of extensions: 6450
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 521
length of database: 140,377
effective HSP length: 61
effective length of query: 460
effective length of database: 114,208
effective search space: 52535680
effective search space used: 52535680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)