GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003680-TA|BGIBMGA003680-PA|undefined
         (373 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.20 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   1.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   5.6  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   7.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   7.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   9.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   9.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   9.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   9.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 0.20
 Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 5/46 (10%)

Query: 197 YLKH-YIKQKRLRRANRHAMIKKKMESVKKL----LEDWQNTLSMV 237
           +LK  Y+K  +L +  +H +++  +  ++K     LEDW+N ++++
Sbjct: 346 FLKQKYVKNSKLEKVIKHDILRMLIIDLRKKQLKSLEDWENEMNII 391


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 192 VYKVAYLKHYIKQKRLRRANRHAMIK-----KKMESVKKLLEDWQNTLSMVINSELTI-L 245
           + +VAY KH I++++     RHA  K     +K ++++  +   +   S  +N   T+ L
Sbjct: 842 IIEVAYKKHQIRKQKKMELARHAADKWRGAIEKRKTLRASIAAQRRIQSNGLNDPTTVSL 901

Query: 246 NIDT 249
            +DT
Sbjct: 902 AVDT 905


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 164 SPENSIYSSLSDGDLRQDCRVKIVNVTNVYKVAYLKHYIKQ 204
           S E  I SSLS+  +  +      N  N  K+ Y  +YI+Q
Sbjct: 76  SREPKIISSLSNKTIHNNNNYNNNNYNNYKKLYYNINYIEQ 116


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 117 ALSHST--PQENREFLIRLLKEMKCDQVNVSERQPGKMDCGEQLPNE 161
           A+S +T  P E  + L+++    K  Q++  +R  G +DC  ++P E
Sbjct: 22  AISKTTVAPIERVKLLLQVQHISK--QISEEQRYKGMIDCFVRIPKE 66


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 117 ALSHST--PQENREFLIRLLKEMKCDQVNVSERQPGKMDCGEQLPNE 161
           A+S +T  P E  + L+++    K  Q++  +R  G +DC  ++P E
Sbjct: 22  AISKTTVAPIERVKLLLQVQHISK--QISEEQRYKGMIDCFVRIPKE 66


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 164 SPENSIYSSLSDGDLRQDCRVKIVNVTNVYKVAYLKHYIKQ 204
           S E+ I SSLS+     +   K +   N  K+ Y  +YI+Q
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQ 116


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 164 SPENSIYSSLSDGDLRQDCRVKIVNVTNVYKVAYLKHYIKQ 204
           S E+ I SSLS+     +   K +   N  K+ Y  +YI+Q
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQ 116


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 164 SPENSIYSSLSDGDLRQDCRVKIVNVTNVYKVAYLKHYIKQ 204
           S E+ I SSLS+     +   K +   N  K+ Y  +YI+Q
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYRKLYYNINYIEQ 116


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 158 LPNESPSPENSIYSSLSDGDLRQDCRVKIVNVTNVYKVAYL 198
           +P E    E+S+Y+++      +DC   I  V++V++   L
Sbjct: 297 IPKEQVK-EDSLYTNIVVDIRNEDCGSAIAYVSDVFRYGLL 336


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.130    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,737
Number of Sequences: 429
Number of extensions: 3357
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 10
length of query: 373
length of database: 140,377
effective HSP length: 59
effective length of query: 314
effective length of database: 115,066
effective search space: 36130724
effective search space used: 36130724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)