GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003679-TA|BGIBMGA003679-PA|IPR000082|SEA, IPR002172|Low
density lipoprotein-receptor, class A, IPR001254|Peptidase S1 and S6,
chymotrypsin/Hap, IPR001190|Speract/scavenger receptor,
IPR001314|Peptidase S1A, chymotrypsin, IPR009003|Peptidase,
trypsin-like serine and cysteine
         (1326 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    81   4e-17
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    31   0.062
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   1.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   3.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   9.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
            protein.
          Length = 405

 Score = 81.4 bits (192), Expect = 4e-17
 Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 14/215 (6%)

Query: 1034 CGATLIHPQWLLSASHCFYQATEAHWVARLGALRRGAWPRGPWERVSRVVQVVTHPKY-- 1091
            CGAT+I  +++L+A+HC            +G     +        +  + +V+ HPKY  
Sbjct: 188  CGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDI 247

Query: 1092 --MSRGFRNDIALLRLERGAMHA-RLRPACLPPAYHMPP-PGRHCTVVGWGQLYEHERVF 1147
                    NDIALL+ E+      ++ PACLP  + +    G   TV+GWG       + 
Sbjct: 248  IEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHT-SFNGML 306

Query: 1148 PDTLQEVELPVISSAECRRRTRLLPLYRVTDDMFCAGYDRGGRDACLGDSGGPLMCQESG 1207
               LQ+  L +++  EC +         +  +  CA Y +G +DAC  DSGGP++ Q   
Sbjct: 307  SHILQKTTLNMLTQVECYKYYG-----NIMVNAMCA-YAKG-KDACQMDSGGPVLWQNPR 359

Query: 1208 RWYIYGVTSNGYGCARANRPGVYTKVSNYIDWIDS 1242
               +  +    +G      P   TKV +YIDWI S
Sbjct: 360  TKRLVNIGIISWGAECGKYPNGNTKVGSYIDWIVS 394


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 31.1 bits (67), Expect = 0.062
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 715 AYELKLEPDIVLEIPVNQTNSLSVEKLKQLANLATISDSNNNTLFRSPGGVISTKAIPS 773
           A ++K + DI+L +P   T SL+      ++ L T + SNN+ L      ++ST ++ S
Sbjct: 696 AKKVKKDKDIILNVPKESTQSLTTTG--NVSYLTTNNTSNNSQLQIPRASLVSTTSVKS 752


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 94  VEETLKNLILQDINTKNSAFGQIRVDPTSIVIKRDLEHTYQSESHVKEALSESMETNHQK 153
           + E ++ L+ +D     S  G     P      + L H +QS     +A ++  +   Q+
Sbjct: 784 IPEVMRRLMSEDKRLSKSVNGDQSQPP-----HQQLHH-HQSTHPQAQAQAQPQQQQQQQ 837

Query: 154 TLTPQNNQSSKDKTLQSRVGVVRKTTVKPNQTTKKTD 190
              PQ  Q  + +  Q + G +      PN   + +D
Sbjct: 838 QQQPQQQQQQQQQQQQQQRGPMTNDDFNPNIEEEASD 874


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 135 SESHVKEALSESMETNHQKTLTPQNNQSSKDKTLQS--RVGVVRKTTVKPNQTTKKTDPD 192
           ++S +   L   +E  H +     N  S K   + S  +    +K  +K N    K DPD
Sbjct: 143 TKSRLMRCLHHDIENAHIRRTLHMNRTSLKTSKIVSYPKSRSRKKGGLKDNLIPDKNDPD 202

Query: 193 EPDIDTENIPVVQGTFQITKTEADITENKHS 223
             +   +   +++    +      ++++ HS
Sbjct: 203 SKECSNQEYEIMKDNLLLYNHARLMSQDNHS 233


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 368 PKFEIPDEL-NAEDRMGVAEVVDDVSILESMLTPIPPVQKRLT 409
           PK ++ D L N E+ +   E+ D VSIL S +     +  R+T
Sbjct: 400 PK-QVADRLRNGENPIDTCEMFDSVSILFSDVVTFTEICSRIT 441


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,787
Number of Sequences: 429
Number of extensions: 16742
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 6
length of query: 1326
length of database: 140,377
effective HSP length: 66
effective length of query: 1260
effective length of database: 112,063
effective search space: 141199380
effective search space used: 141199380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)