GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003677-TA|BGIBMGA003677-PA|undefined
         (533 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   6.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   6.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   8.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   8.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 146 RYNPAQPYLPQPYGGNSKQSGGYSAPEKAVANL 178
           R  P+ P LP+P   ++       AP K + +L
Sbjct: 646 RKMPSMPLLPRPISCHTTPDSFIEAPNKTLPSL 678


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 57  VPLDENFALPGFTSNPGNGAENESRAIRTEP 87
           V L++N       SNPG  A  E R I T P
Sbjct: 300 VTLEDNGIYRCSASNPGGEASAEIRLIVTAP 330


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 57  VPLDENFALPGFTSNPGNGAENESRAIRTEP 87
           V L++N       SNPG  A  E R I T P
Sbjct: 300 VTLEDNGIYRCSASNPGGEASAEIRLIVTAP 330


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 324 SMSDDHMAHNHPLHSHVPSNNDHHDSD 350
           S + ++  HN   H    SNN H+++D
Sbjct: 438 SDNQNNNQHNDQAHHSSKSNNRHNNND 464


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 308 EKPEFQGYVYSKPEPPSMSDDHMAHNHPLHSHVPSNNDHHDSDYPELIYNKPHDGMSDAK 367
           E P+ +      P    + +    ++  LH + PS    H  D  + +Y  P   M  + 
Sbjct: 92  ENPDEEKRYQEHPNGKILRELQTDYDRRLHDNSPSFLSDHSRDQEQNLYLTPSPQMYSSG 151

Query: 368 G 368
           G
Sbjct: 152 G 152


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,772
Number of Sequences: 429
Number of extensions: 7801
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 533
length of database: 140,377
effective HSP length: 61
effective length of query: 472
effective length of database: 114,208
effective search space: 53906176
effective search space used: 53906176
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)