GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003676-TA|BGIBMGA003676-PA|IPR011701|Major facilitator
superfamily MFS_1
         (752 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.74 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   6.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   6.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   9.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   9.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   9.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   9.1  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 26.6 bits (56), Expect = 0.74
 Identities = 11/43 (25%), Positives = 25/43 (58%)

Query: 673 SVNNDICKPQPTDVEGVKGSDKTSSPLDVATDKFENDKVLDLN 715
           S+NN + + + T+V  +   D T   LD++  + ++ ++ DL+
Sbjct: 493 SLNNAVGEMEATNVTNILSMDNTQYNLDLSLPQLDSTELADLD 535


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 262 NDIFKQNDEGGEEMETFRMRISHDAQKTPKTVRNYWVRALSSGNGSIDNDYDGVDSVICK 321
           ND   Q++      +TF  R  +D ++  K    Y    L +   S+    +GV+  I  
Sbjct: 119 NDYGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDEKSLFE--NGVEIGINF 176

Query: 322 NSYDEV 327
           + YD +
Sbjct: 177 DKYDNI 182


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 233 DREIFFPAPRLYKMHCSRDLNNGSCVFGRNDIFKQNDE 270
           D++  FP    Y  +     +NGS     + +FKQN E
Sbjct: 127 DQKFIFPQENNYNDNYFYSKSNGSNSSNSDVLFKQNKE 164


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 14/62 (22%), Positives = 21/62 (33%)

Query: 493 FIACFIMGTAWGYIESFLFWLLQDLGASRSLMGITITXXXXXXXXXXXXXXPIIRKLGHA 552
           F   FI G          FWL  +   +R ++G+T                P++  L   
Sbjct: 304 FTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAM 363

Query: 553 NV 554
           NV
Sbjct: 364 NV 365


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 14/62 (22%), Positives = 21/62 (33%)

Query: 493 FIACFIMGTAWGYIESFLFWLLQDLGASRSLMGITITXXXXXXXXXXXXXXPIIRKLGHA 552
           F   FI G          FWL  +   +R ++G+T                P++  L   
Sbjct: 273 FTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAM 332

Query: 553 NV 554
           NV
Sbjct: 333 NV 334


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 14/62 (22%), Positives = 21/62 (33%)

Query: 493 FIACFIMGTAWGYIESFLFWLLQDLGASRSLMGITITXXXXXXXXXXXXXXPIIRKLGHA 552
           F   FI G          FWL  +   +R ++G+T                P++  L   
Sbjct: 324 FTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAM 383

Query: 553 NV 554
           NV
Sbjct: 384 NV 385


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 14/62 (22%), Positives = 21/62 (33%)

Query: 493 FIACFIMGTAWGYIESFLFWLLQDLGASRSLMGITITXXXXXXXXXXXXXXPIIRKLGHA 552
           F   FI G          FWL  +   +R ++G+T                P++  L   
Sbjct: 273 FTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAM 332

Query: 553 NV 554
           NV
Sbjct: 333 NV 334


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,911
Number of Sequences: 429
Number of extensions: 8057
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 752
length of database: 140,377
effective HSP length: 63
effective length of query: 689
effective length of database: 113,350
effective search space: 78098150
effective search space used: 78098150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)