GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003673-TA|BGIBMGA003673-PA|undefined
         (119 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   1.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   2.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 75  ELSEDEDNTPADNACVSEKNSNGKTSEG 102
           E+ ED+D+   D+     + +NGK +EG
Sbjct: 388 EVDEDDDDDGDDDDDDDVEAANGKPAEG 415


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)

Query: 77  SEDEDNTPADNACVSEKNSNGKTSE 101
           +EDED TP D   V    SN K++E
Sbjct: 435 NEDEDETPLDPVVVI---SNDKSTE 456


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 73  GRELSEDEDNTPADNACVSEKNSNGKTSEG-NEDQEMETRVN 113
           GR  +++  N  ADN     +N+N + ++  N +++   R N
Sbjct: 420 GRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQN 461


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.130    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,505
Number of Sequences: 429
Number of extensions: 1167
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 119
length of database: 140,377
effective HSP length: 51
effective length of query: 68
effective length of database: 118,498
effective search space:  8057864
effective search space used:  8057864
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)
S2: 39 (19.8 bits)