GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003670-TA|BGIBMGA003670-PA|IPR003100|Argonaute and Dicer
protein, PAZ, IPR003165|Stem cell self-renewal protein Piwi
         (912 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   3.7  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   8.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   8.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   8.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   8.5  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 743 ACIKLEAEYKPGITFIVVQKRHHTRLFCAD 772
           AC     E  P  TFI+V + + T +FC D
Sbjct: 322 ACWDTNTELNPN-TFILVAENNTTMVFCND 350


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 599 VQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSLR 635
           V  K + +  P+ L+N C +   +  GI + L+P ++
Sbjct: 48  VIGKKIKELLPEVLNNHCNRCTSRQIGIANTLIPFMQ 84


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 315 IEITHCGTMKRKYRVCNVTRRPAQMQSFPL 344
           I I H G++ R  R+      P  +Q FP+
Sbjct: 118 IRIHHSGSITRSIRLTITASCPMNLQYFPM 147


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 315 IEITHCGTMKRKYRVCNVTRRPAQMQSFPL 344
           I I H G++ R  R+      P  +Q FP+
Sbjct: 118 IRIHHSGSITRSIRLTITASCPMNLQYFPM 147


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 315 IEITHCGTMKRKYRVCNVTRRPAQMQSFPL 344
           I I H G++ R  R+      P  +Q FP+
Sbjct: 57  IRIHHSGSITRSIRLTITASCPMNLQYFPM 86


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,686
Number of Sequences: 429
Number of extensions: 10972
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 5
length of query: 912
length of database: 140,377
effective HSP length: 64
effective length of query: 848
effective length of database: 112,921
effective search space: 95757008
effective search space used: 95757008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)