GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003664-TA|BGIBMGA003664-PA|IPR008262|Lipase, active
site, IPR013818|Lipase, N-terminal, IPR000734|Lipase
         (333 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.70 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 91  LTHGWLNHGDSPMPESIKEAYLNVSDLN 118
           LT  WL  G SP P     A  N+S L+
Sbjct: 641 LTISWLKDGQSPFPLPPNLASANISQLD 668


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 127 AANVNYILASYNVAGVGKILTDFLN 151
           A N  Y   SY VAG+G+ + D L+
Sbjct: 437 ANNQPYTKDSYTVAGMGETIEDLLH 461


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 125 GNAANVNYILASYNVAGVGKILTDFLNHLIGEGVSMNDVHLIGHSLGAHVVGIAGAYVKK 184
           G    V YI+  + +AG   I+  FL H I         +++      H     G+ V  
Sbjct: 151 GRTHTVGYIIIGFLLAG---IVQPFLIHWIWTPHGWMRRNVLNKQ-HVHFHDYTGSVV-- 204

Query: 185 GPIDTITGLDPALPLFTLGNKDARLDKHDARHVEV 219
             I  + GL   +   TLG +  RLD  D   + V
Sbjct: 205 --IHVVGGLTGLIGCLTLGRRILRLDAIDEASIAV 237


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.141    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,004
Number of Sequences: 429
Number of extensions: 5248
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 333
length of database: 140,377
effective HSP length: 58
effective length of query: 275
effective length of database: 115,495
effective search space: 31761125
effective search space used: 31761125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)