GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003662-TA|BGIBMGA003662-PA|undefined
         (492 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   1.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   4.4  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 13/67 (19%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 299 YIHKNLKRVRIANNRFKEVGV---QGIAYALQMKPAAPIELLDFSLNPMSLECATIFAAA 355
           +++  +  +   N++F  V +   + + Y+ +M      ++ +F L PM ++   I+  +
Sbjct: 78  FLNAKVSEIAALNHKFSSVTLYRNKTVKYSARMHAIIACQM-EFQLYPMDIQICPIYIES 136

Query: 356 FVRCKEK 362
           F   K+K
Sbjct: 137 FSYHKQK 143


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 293 ALGGFIYIHKNLKRV 307
           ALG F ++H++LK V
Sbjct: 99  ALGNFYFVHESLKNV 113


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.139    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,615
Number of Sequences: 429
Number of extensions: 7256
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 2
length of query: 492
length of database: 140,377
effective HSP length: 60
effective length of query: 432
effective length of database: 114,637
effective search space: 49523184
effective search space used: 49523184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)