GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003660-TA|BGIBMGA003660-PA|undefined
         (370 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   5.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   9.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   9.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 36  SLGLQLASFETKEKADSITTYLTNAGY 62
           +LG  L   E K+KAD I  +L+   Y
Sbjct: 450 TLGGTLVFVEMKKKADFIAVFLSENNY 476



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 79  SLGLQLASFETKEKADSITTYLTNAGY 105
           +LG  L   E K+KAD I  +L+   Y
Sbjct: 450 TLGGTLVFVEMKKKADFIAVFLSENNY 476


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 257 NLNNLIGKLRPSSLDGLQSAHLKTSALFKSPPQIDS 292
           +LNN +G++  +++  + S       L  S PQ+DS
Sbjct: 493 SLNNAVGEMEATNVTNILSMDNTQYNLDLSLPQLDS 528


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 288 PQIDSHYSRAADAHSRDHDQDQK-EEPTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGDEI 346
           PQ   H S+A   H + H+Q    ++  Q      +   G  P      + H   V   +
Sbjct: 181 PQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPRQQQQAQQHQGVVTSPL 240

Query: 347 ASTAEPDATEHSVHASGMLAPPAY 370
            S  +  A + +  AS  L  P Y
Sbjct: 241 -SQQQQAAPQGA--ASANLPSPLY 261


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 13  YFISRMNPYSPELNYF 28
           Y++ +  P  P+LNY+
Sbjct: 182 YYLHQFAPEQPDLNYY 197


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 13  YFISRMNPYSPELNYF 28
           Y++ +  P  P+LNY+
Sbjct: 182 YYLHQFAPEQPDLNYY 197


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,449
Number of Sequences: 429
Number of extensions: 4854
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 370
length of database: 140,377
effective HSP length: 59
effective length of query: 311
effective length of database: 115,066
effective search space: 35785526
effective search space used: 35785526
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)