GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003659-TA|BGIBMGA003659-PA|IPR008636|HOOK
         (500 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 174 HSDAEMREILAQRCHELDTQVTDLNEKLDAEITKADKLEIENKKLSSRAASLQRERDALV 233
           HS + + +    RC   D +   +   L    T      ++  K+ S   S  R++  L 
Sbjct: 137 HSGSSLTKSRLMRCLHHDIENAHIRRTLHMNRTS-----LKTSKIVSYPKSRSRKKGGLK 191

Query: 234 EEKSMLRETVDELRCSTMTTDASKDNV 260
           +     +   D   CS    +  KDN+
Sbjct: 192 DNLIPDKNDPDSKECSNQEYEIMKDNL 218


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 1   MEGNGAVLCDNLINWLQT 18
           ++GN   +C N +NW+ T
Sbjct: 800 IDGNVVFVCHNGMNWMPT 817


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,589
Number of Sequences: 429
Number of extensions: 4939
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 500
length of database: 140,377
effective HSP length: 61
effective length of query: 439
effective length of database: 114,208
effective search space: 50137312
effective search space used: 50137312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)