GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003655-TA|BGIBMGA003655-PA|IPR000488|Death,
IPR001354|Mandelate racemase/muconate lactonizing enzyme,
IPR013342|Mandelate racemase/muconate lactonizing enzyme, C-terminal,
IPR011029|DEATH-like
         (567 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   1.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   3.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   5.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   5.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   6.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   6.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 4   LKTKLSEFIKGFRTDAVPRQPRPVNVDFDHQVPP 37
           +K  L + I GFR DAVP      N+  D   PP
Sbjct: 216 MKFWLDKGIDGFRIDAVPHLFESANISLDE--PP 247


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 214 MRWIGPEKGVTHLAVAAIVNSLWDLWARIENKP 246
           ++W   E+GV  L  +  V+ LW L    +NKP
Sbjct: 478 IKWTNRERGVFKLVDSKAVSRLWGLH---KNKP 507


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 89  NNHKGSSILKPEDEHLDYISKNMGKTWRKFFRKLGFTEGRID---TFEHDNKI 138
           N+ K   +   E++HL  IS  MG    + +R+L      I+    F H++++
Sbjct: 212 NDDKTFLVWCNEEDHLRIISMQMGGDLGQVYRRLVHAVNEIEKRLLFSHNDRL 264


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 102 EHLDYISKNMGKTWRKFFRKLGFTEGRIDTF 132
           EH +   KN G+  R++ R+L   +GR+  F
Sbjct: 282 EHQNVFVKNSGQWLREYDRELEDFDGRLFEF 312


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 292 IEFLLENGYPCYTTQVGWLGYSDELVEELCDKY 324
           +EF + N Y          GYSDE + E  D++
Sbjct: 292 MEFAVVNNYMGPVATKAMKGYSDEDLREAIDEF 324


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 321 CDKYLKLGFTYFKVK 335
           C+KY K G TY ++K
Sbjct: 163 CEKYEKNGETYLRIK 177


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,914
Number of Sequences: 429
Number of extensions: 6528
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 6
length of query: 567
length of database: 140,377
effective HSP length: 61
effective length of query: 506
effective length of database: 114,208
effective search space: 57789248
effective search space used: 57789248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)