GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003653-TA|BGIBMGA003653-PA|IPR006035|Ureohydrolase
         (354 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   1.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   1.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query: 158 LTPKTKNAEGIVNFAKRLNISEPY 181
           L  + ++A GI+  A+R N+S+P+
Sbjct: 202 LFTRAEDARGILEAARRSNLSQPF 225


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query: 158 LTPKTKNAEGIVNFAKRLNISEPY 181
           L  + ++A GI+  A+R N+S+P+
Sbjct: 292 LFTRAEDARGILEAARRSNLSQPF 315


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 238 QELENLFQYLEENNSLDGYKYEKT 261
           Q+L+  F + +ENN  D Y Y K+
Sbjct: 124 QKLDQKFIFPQENNYNDNYFYSKS 147


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 219 DNDDAATVE-KVVELRERQIQELENLFQYLEENN 251
           +N   ATV+   V++  R+  EL N+++ +E NN
Sbjct: 684 ENLTCATVKGSAVDMYFRRQVELSNMYRTMEANN 717


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 21  YVVEEHNDALQFIYSAIGGKKLPV 44
           ++ E  NDA   +YSA+G   +P+
Sbjct: 237 WICELTNDAGYVVYSALGSFYIPM 260


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,492
Number of Sequences: 429
Number of extensions: 5008
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 354
length of database: 140,377
effective HSP length: 58
effective length of query: 296
effective length of database: 115,495
effective search space: 34186520
effective search space used: 34186520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)