GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003652-TA|BGIBMGA003652-PA|IPR001664|Intermediate
filament protein, IPR001322|Intermediate filament, C-terminal,
IPR011000|Apolipophorin III-like, IPR010989|t-snare,
IPR009053|Prefoldin
         (620 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   1.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   2.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 297 ENKLKNLQNAASRNSNAATVAVEELRTMRTRIDSLNSQLNDLEN 340
           E+KL NL +   +N +   + + +  T++   +S    +ND+ N
Sbjct: 37  EDKLDNLMDKQFKNKSLPVIEIWDQMTVKELANSAKRDINDVLN 80


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 501 KELSLGGYQILRKAGDQETVFKFHR 525
           K L LG  Q+L  +G+ E   + HR
Sbjct: 238 KSLKLGTKQVLMASGELELTLRIHR 262


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.127    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,289
Number of Sequences: 429
Number of extensions: 4845
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 2
length of query: 620
length of database: 140,377
effective HSP length: 62
effective length of query: 558
effective length of database: 113,779
effective search space: 63488682
effective search space used: 63488682
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)