GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003650-TA|BGIBMGA003650-PA|IPR002035|von Willebrand
factor, type A, IPR013608|VWA N-terminal, IPR004010|Cache
         (1019 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   4.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   7.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    24   7.2  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    24   7.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    24   7.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   9.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   9.5  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   9.5  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   9.5  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 655 HKFVVTLSFIATRSGLLKWTENFNGSRNSDSAEQHFSEKYSR 696
           H  V+ ++   + +   K+  + N  RN     QH S +YSR
Sbjct: 181 HDTVLVVNIEKSENESKKYATSSNSLRNRTHGFQHTSSRYSR 222


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 655 HKFVVTLSFIATRSGLLKWTENFNGSRNSDSAEQHFSEKYSR 696
           H  V+ ++   + +   K+  + N  RN     QH S +YSR
Sbjct: 192 HDTVLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSR 233


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 655 HKFVVTLSFIATRSGLLKWTENFNGSRNSDSAEQHFSEKYSR 696
           H  V+ ++   + +   K+  + N  RN     QH S +YSR
Sbjct: 197 HDTVLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSR 238


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 655 HKFVVTLSFIATRSGLLKWTENFNGSRNSDSAEQHFSEKYSR 696
           H  V+ ++   + +   K+  + N  RN     QH S +YSR
Sbjct: 192 HDTVLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSR 233


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 655 HKFVVTLSFIATRSGLLKWTENFNGSRNSDSAEQHFSEKYSR 696
           H  V+ ++   + +   K+  + N  RN     QH S +YSR
Sbjct: 192 HDTVLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSR 233


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 352 SPVYVGGRSSSLADNGMGQLMTSVTVPIFDRRNHT 386
           SP Y GG SSS + +      +SV+       N+T
Sbjct: 80  SPSYPGGGSSSPSPSSPSSFFSSVSPTSLGSENYT 114


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 655 HKFVVTLSFIATRSGLLKWTENFNGSRNSDSAEQHFSEKYSR 696
           H  V+ ++   +     K+  + N  RN     QH S +YSR
Sbjct: 181 HDTVLVVNIEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSR 222


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 655 HKFVVTLSFIATRSGLLKWTENFNGSRNSDSAEQHFSEKYSR 696
           H  V+ ++   +     K+  + N  RN     QH S +YSR
Sbjct: 192 HDTVLVVNIEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSR 233


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 655 HKFVVTLSFIATRSGLLKWTENFNGSRNSDSAEQHFSEKYSR 696
           H  V+ ++   +     K+  + N  RN     QH S +YSR
Sbjct: 181 HDTVLVVNIEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSR 222


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,028
Number of Sequences: 429
Number of extensions: 11566
Number of successful extensions: 39
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 9
length of query: 1019
length of database: 140,377
effective HSP length: 65
effective length of query: 954
effective length of database: 112,492
effective search space: 107317368
effective search space used: 107317368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)