GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003644-TA|BGIBMGA003644-PA|IPR001683|Phox-like
         (504 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   1.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   5.9  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 239 NVSLDLLYLQTNEELDLGWIIADAQTRDILRKYEAKKQKREFME 282
           N+SLD   L  N  L L   +    T+D    YE  K+ R+F++
Sbjct: 240 NISLDEPPLGKNLNLSLHASLNHTLTKDQPETYELVKEWRDFVD 283


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 324 ELTLTTVTQPQREQRFKVTRMRCWRITT-----LHCMERPQTNGHSSENEEP 370
           E   TT+    +E      R+  + ITT     +H ++  + NG +SE+ +P
Sbjct: 79  EKVSTTIVPTTQEINKPFKRLELFNITTTTIHSIHSIDGDEENGLTSESTDP 130


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 363 HSSENEEPNKNFELSFEYLISKDNLQWITLRTEH-ATFISVCLQSI 407
           H S N+E   N  L F   +S  + +  T   +H A F+ V  Q +
Sbjct: 249 HQSINKEARSNLYLPFHLTLSFRDFRDRTTEQQHKAMFLVVTAQPV 294


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 363 HSSENEEPNKNFELSFEYLISKDNLQWITLRTEH-ATFISVCLQSI 407
           H S N+E   N  L F   +S  + +  T   +H A F+ V  Q +
Sbjct: 244 HQSINKEARSNLYLPFHLTLSFRDFRDRTTEQQHKAMFLVVTAQPV 289


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,023
Number of Sequences: 429
Number of extensions: 4951
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 504
length of database: 140,377
effective HSP length: 61
effective length of query: 443
effective length of database: 114,208
effective search space: 50594144
effective search space used: 50594144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)