GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003641-TA|BGIBMGA003641-PA|IPR001766|Fork head
transcription factor
         (239 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    81   2e-16
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    79   4e-16
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    79   8e-16
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    69   6e-13
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    29   0.60 
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    27   1.8  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   2.4  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    27   2.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.4  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.8  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    25   9.8  

>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 30/71 (42%), Positives = 45/71 (63%)

Query: 5   SSPERMLPLSEIYRFITDRFPYYRRNTQRWQNSLRHNLSFNDCFVKVPRRPDRPGKGAYW 64
           ++P + + L +I  +I + + YYR     W NS+RHNLS N  F+++PRR + PGKG++W
Sbjct: 306 ANPNKKMTLGDICEWIANNWSYYRHQPPAWHNSIRHNLSLNKAFIRIPRRQNEPGKGSFW 365

Query: 65  TLHPQAFDMFE 75
            L P   D FE
Sbjct: 366 MLDPSYIDQFE 376


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 36/73 (49%), Positives = 46/73 (63%)

Query: 2   AIWSSPERMLPLSEIYRFITDRFPYYRRNTQRWQNSLRHNLSFNDCFVKVPRRPDRPGKG 61
           AI SS E M+ LS IY +I+  +PYYR     WQNS+RHNLS N  F KVPR+    GKG
Sbjct: 235 AILSSSECMMTLSNIYSWISTHYPYYRTTKSGWQNSIRHNLSLNKAFRKVPRKSGEQGKG 294

Query: 62  AYWTLHPQAFDMF 74
             W++ P+  + F
Sbjct: 295 MKWSIVPEFREEF 307


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 78.6 bits (185), Expect = 8e-16
 Identities = 33/74 (44%), Positives = 49/74 (66%)

Query: 1   MAIWSSPERMLPLSEIYRFITDRFPYYRRNTQRWQNSLRHNLSFNDCFVKVPRRPDRPGK 60
           M+I  SP+R L LS IY +I++ F +Y ++   WQNS+RHNLS N  F+K+ R  + PGK
Sbjct: 139 MSIIRSPDRRLTLSAIYDWISNTFSFYNKSNNGWQNSIRHNLSLNKAFMKIERPRNLPGK 198

Query: 61  GAYWTLHPQAFDMF 74
           G +W++ P   + F
Sbjct: 199 GHFWSIRPGHEEQF 212


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 32/74 (43%), Positives = 42/74 (56%)

Query: 1   MAIWSSPERMLPLSEIYRFITDRFPYYRRNTQRWQNSLRHNLSFNDCFVKVPRRPDRPGK 60
           +AI  S  + L LS IY +I + F YY  +   WQNS+RHNLS N  F+KV +   +  K
Sbjct: 92  LAILQSHNKQLTLSGIYTWIRNTFRYYLNHDGGWQNSIRHNLSLNKAFIKVEKPKGKTLK 151

Query: 61  GAYWTLHPQAFDMF 74
           G YWT+ P     F
Sbjct: 152 GHYWTIDPDHMQNF 165


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 112 ARQASAPPTPTNASS----GGLYP-SASTYMSRLSPESTEA 147
           A  + +  TPTNASS     G  P SAS Y+  L P  TEA
Sbjct: 54  AEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEA 94


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 91  GEKDSLNAELAALASFNRAFLARQASAPPTPTNASSGGLYPSASTYMSRLSPESTEAPD 149
           G   +LNA+ +A    N+ +++   S  P+P  A+     P++   +  L   S+ AP+
Sbjct: 110 GSSPALNADFSA----NKPWISEVNSFSPSPIGATENPTIPNSEQTVDTLDAASSSAPN 164


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 113 RQASAPPTPTNASSGGLYPSASTYM-SRLSPESTEAP-DTAALLPVAP 158
           R AS  PTP N  +G +  +  +YM S+ SP    AP      +P AP
Sbjct: 106 RPASNGPTPPNPGNGNVGLNNPSYMNSQASPNIMNAPLQRDTSVPPAP 153


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 107 NRAFLARQASAPPTPTNASSGGLYPSASTYMSRLSPESTEAPDTAALLPV 156
           +RA  A Q   PP P++++  G   +  ++  R++  +T  PD A  L V
Sbjct: 11  SRAPTASQLLNPPPPSSSTRSGRLFAPLSHTMRINHAATFTPDLAKRLAV 60


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 116 SAPPTPTNASSGGLYPSASTYMSRLSPESTEAPDTA-ALLPVAP 158
           S PP P + SS G   S     S     ST  P T  +  PV P
Sbjct: 314 STPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTP 357



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 116 SAPPTPTNASSGGLYPSASTYMSRLSPESTEAPDTA-ALLPVAP 158
           S PP P + SS G   S     S     ST  P T  +  PV P
Sbjct: 368 STPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTP 411


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 30  NTQRWQNSLRHNLSFNDCFVKV 51
           +T+ W + LRH L+   CF+ V
Sbjct: 170 STEEWNSHLRHLLNIPKCFLGV 191


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 112 ARQASAPPTPTNASSGGLYPSASTYMSRLSPESTEAPDTA 151
           A  +  P  PTNAS+     S+S   S  SP S  +P  A
Sbjct: 277 ATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSSPSDA 316


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 115 ASAPPTPTNASSGGLYPSASTYMSRLSPESTEAPDTAALLPVAPRPRRAFTID 167
           A A P P  AS+    P++    S   PE+  A  T  +   APR   A T D
Sbjct: 324 AEAKPEPVPASAAERAPTSE---STTVPETIVASTTKVISEPAPRVTTAATAD 373


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.131    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 935,575
Number of Sequences: 5004
Number of extensions: 31485
Number of successful extensions: 108
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 15
length of query: 239
length of database: 2,362,478
effective HSP length: 71
effective length of query: 168
effective length of database: 2,007,194
effective search space: 337208592
effective search space used: 337208592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)