Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003641-TA|BGIBMGA003641-PA|IPR001766|Fork head
transcription factor
(239 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0949 - 22920363-22920685,22922621-22922824,22923170-229232... 30 1.9
07_03_0164 + 14616156-14616225,14616409-14616477,14617672-146179... 29 2.5
06_03_1512 - 30688098-30688133,30688401-30688537,30688744-306888... 29 2.5
08_02_1085 + 24237804-24238403 29 4.4
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 28 5.8
07_03_0773 - 21387606-21387878,21387965-21388121,21388202-213884... 28 5.8
07_03_0771 - 21381276-21381461,21381583-21381733,21381823-213820... 28 5.8
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 28 5.8
03_06_0711 - 35682293-35682952 28 5.8
02_05_0171 - 26441007-26441918 28 5.8
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 5.8
07_03_1107 - 24024387-24024497,24025799-24026410 28 7.7
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 28 7.7
04_04_0248 - 23891684-23892064 28 7.7
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 28 7.7
01_02_0059 - 10701859-10701963,10702034-10702153,10702534-107026... 28 7.7
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 28 7.7
>08_02_0949 -
22920363-22920685,22922621-22922824,22923170-22923263,
22923376-22923470,22923612-22923783
Length = 295
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 112 ARQASAPPTPTNASSGGLYPSASTYMSRLSPESTEAPDTAALLPVAPRPRR 162
+R +APP + A + +YP A S L +T A A +L PRP R
Sbjct: 198 SRTTAAPPPLSGAGTSVVYPFAVVKPSGLDGGATLADINARILTRPPRPVR 248
>07_03_0164 +
14616156-14616225,14616409-14616477,14617672-14617902,
14618394-14618557,14618795-14618935,14619632-14619691,
14620358-14620522,14620676-14620732,14621084-14621148,
14622235-14622358,14622469-14622606,14622705-14622830
Length = 469
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 207 YHAELLAGLQQSCLPPLWTWRESNQFSHYTLNS 239
+ L+A +QQ +P + W+ N F++Y NS
Sbjct: 40 FAGNLVADIQQKIIPGVTHWQSPNYFAYYPSNS 72
>06_03_1512 -
30688098-30688133,30688401-30688537,30688744-30688834,
30689265-30690815
Length = 604
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 104 ASFNRAFLARQASAPPTPTNASS-GGLYPSASTYMSRLSPESTEAPDTAALLPVAPRPRR 162
A+F+ F R + P+PT++ L + LS S+ D + LL VA + R
Sbjct: 93 AAFSAGFATRHLAPSPSPTHSRRLAALLADLDAQLRALSSSSSSTADPSLLLDVANQLRD 152
Query: 163 AFTIDA 168
A + A
Sbjct: 153 AARLAA 158
>08_02_1085 + 24237804-24238403
Length = 199
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 103 LASFNRAFLARQASAPPTPTNASSGGLYPSASTYMSRLSPESTEAPDTAALLPVAPRPRR 162
LA+ LA +A AP +SS S S +P +++P+ + P A P+
Sbjct: 13 LAACAAVALAAEAQAPAAAPKSSSSSNSSSGSHTSPSKAPSPSKSPEKSGKAPAAAPPKA 72
Query: 163 A 163
A
Sbjct: 73 A 73
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 111 LARQASAPPTPTNASSGGLYPSASTYMSRLSPE 143
+A SAP P+ AS GGL AS Y +L+ +
Sbjct: 169 VAAAVSAPAPPSPASQGGLRVVASPYARKLAKD 201
>07_03_0773 -
21387606-21387878,21387965-21388121,21388202-21388439,
21388522-21388729,21390046-21390201,21390414-21391211
Length = 609
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 115 ASAPPTPTNASSGGLYPSASTYMSRL 140
A+A P P +SGG Y + STY S L
Sbjct: 22 AAAQPWPVCGTSGGNYTAGSTYESNL 47
>07_03_0771 -
21381276-21381461,21381583-21381733,21381823-21382060,
21382161-21382368,21382650-21382777,21382892-21383029,
21383160-21384012
Length = 633
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 115 ASAPPTPTNASSGGLYPSASTYMSRL 140
A+A P P +SGG Y + STY S L
Sbjct: 25 AAAQPWPVCGTSGGNYTAGSTYESNL 50
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 97 NAELAALASFNRAFLARQA---SAPPTPTNASSG 127
+AEL+ALAS R AR A P P++ASSG
Sbjct: 115 DAELSALASATRPVTARAAVFREPSPAPSDASSG 148
>03_06_0711 - 35682293-35682952
Length = 219
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 103 LASFNRAFLARQASAPPTPTNASSGGLYPSASTYMSRLSPESTEAPDTAALLPVAP 158
LAS ASAP T A+ L+P A ++ P S + AAL P AP
Sbjct: 22 LASAESPISLPPASAPTASTPAADERLHP-ADAALAPSQPPSEASSSAAALSPPAP 76
>02_05_0171 - 26441007-26441918
Length = 303
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 98 AELAALASFNRAFLARQASAPPTPTNASSGGLYPSASTYMSRLSPESTEAPDTAALLPVA 157
A AA A R + +S +P+++SS S+ + R E+ A AL+P
Sbjct: 216 AAAAAAAGNKRPYPDPASSGSSSPSSSSSSSSSSSSGSPKRRKRGEAAAASMAMALVPPP 275
Query: 158 PRPRRA 163
P P +A
Sbjct: 276 PPPAQA 281
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 119 PTPTNASSGGLYPSASTYMSRLSPESTEAPDTAALLPVAPRPRRA 163
PTP A++ + +R +P + EAP A+ P P PRR+
Sbjct: 21 PTPAAAAAAACCSRRNISCARAAPRALEAPQ-ASRPPPRPSPRRS 64
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 100 LAALASFNRAFLARQASAPPTPTNASSGGLYPSASTYMSRLSPESTEAPDTAALLPVAPR 159
+AA AS +A A+AP T ASS A+ + P ++ P A P P
Sbjct: 15 VAASASAQKA-TPTPAAAPATTPPASSKKTPAPAAAPTTTTPPAASTPPAAAPTTPATPA 73
Query: 160 PRRAFTIDA 168
P A T A
Sbjct: 74 PAEAPTTPA 82
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 113 RQASAPPTPTNASSGGLYPSASTYMSRL----SPESTEAPDTAALLPVAPRP 160
R AS P TP +S+G P A T + + ++ ++ + P APRP
Sbjct: 18 RSASPPATPVASSAGASSPPAQTNAASIDWLGGEPISKVESSSQIAPHAPRP 69
>04_04_0248 - 23891684-23892064
Length = 126
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 101 AALASFNRAFLARQASAPPTPTNASSGGLYPSASTYMSRLSPESTEAPDTAALLPVAP 158
+A A+ +R LA A+ P A++ L PSA+T P + AP A AP
Sbjct: 47 SAAAAASRMRLAAAAATRMRPAAAAAMPLLPSAATAARMWPPAAKAAPMHPAAATAAP 104
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 120 TPTNASSGGLYPSASTYMSRLSPESTEAPDTAALLPVAPRPRR 162
+P + SG + AST + + +P ++ PVA RP+R
Sbjct: 1402 SPFHKKSGSVLQRASTASTSTEETESSSPSGSSAEPVAARPKR 1444
>01_02_0059 -
10701859-10701963,10702034-10702153,10702534-10702609,
10702897-10703276
Length = 226
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 108 RAFLARQASAPPTPTNASSGGLYPSAS 134
R + RQA PP+P +SS + PSA+
Sbjct: 70 RRLVRRQARPPPSPPPSSSSAVEPSAA 96
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 119 PTPTNASSGGLYPSASTYMSRLSPESTEAPDTAALLPVAPRPR 161
P P++A SGG A++ +R SP +T D P P PR
Sbjct: 97 PPPSSAPSGG---RATSSEARESPHATSVDDGGRAPPPPPLPR 136
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.131 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,302,138
Number of Sequences: 37544
Number of extensions: 220097
Number of successful extensions: 934
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 20
length of query: 239
length of database: 14,793,348
effective HSP length: 80
effective length of query: 159
effective length of database: 11,789,828
effective search space: 1874582652
effective search space used: 1874582652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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