GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003641-TA|BGIBMGA003641-PA|IPR001766|Fork head
transcription factor
         (239 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   7.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 92  EKDSLNAELAALASFNRAFLARQASAPP--TPTNASSGGLYPSASTYMS 138
           +KDS  AE A +    ++ L    ++PP  +P++ +     P  ++ +S
Sbjct: 652 QKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSSQAQASQCPQTASLLS 700


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 8   ERMLPLSEIYRFITDRFPYYRRNTQRW 34
           +R+L +SEI   I D  P  +   Q W
Sbjct: 570 DRVLVISEIQMVIVDVIPTDKNPVQLW 596


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 143  ESTEAPDTAALLPVAPRPRRAFTID 167
            ES   P  +   PV  RP R  T+D
Sbjct: 1352 ESYRGPSASGGRPVPERPERVPTVD 1376


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 67  HPQAFDMFENGSXXXXXXXXXXXXGEKDSLNAELAALASFNRAFLARQASAPPTPTNASS 126
           H Q F     G+             E  SL+A   A A+ N A    Q    P+PT +S 
Sbjct: 15  HQQLFSSANPGTIQACTTSPATASLES-SLSAAAVAAAAVNYA----QQHNSPSPTGSSP 69

Query: 127 GGLYPSAST 135
                SAST
Sbjct: 70  QHSGSSAST 78


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 1   MAIWSSPERMLPLSEIYRFITDRFPYYRRNTQRW 34
           + +WS+  R      IY+ I D +  Y+ N  ++
Sbjct: 405 LQMWSTSLRDPVFFSIYKTILDYYHKYKENLPKY 438


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 1  MAIWSSPERMLPLSEIYRFITDRFPYYRRNTQRW 34
          + +WS+  R      IY+ I D +  Y+ N  ++
Sbjct: 31 LQMWSTSLRDPVFFSIYKTILDYYHKYKENLPKY 64


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.131    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,325
Number of Sequences: 429
Number of extensions: 2176
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 239
length of database: 140,377
effective HSP length: 56
effective length of query: 183
effective length of database: 116,353
effective search space: 21292599
effective search space used: 21292599
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)