GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003638-TA|BGIBMGA003638-PA|undefined
         (160 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.1  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 28  VIARAETTKQTAVATKPRQSAFVVSLIPETENNE 61
           V+AR E T Q  V+ K +Q+      +  T+ NE
Sbjct: 341 VVARNEDTLQMVVSMKIKQNVPQSGRVNNTQRNE 374


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 3   THCKETFSDASSLCLHLKEVHGQDAVI 29
           T C ETF    ++ LH+K  H   +V+
Sbjct: 263 TLCHETFGSKKTMELHIK-THSDSSVV 288



 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 3   THCKETFSDASSLCLHLKEVHGQDAVIARA 32
           T C +TF  +  L +H++   G+   + +A
Sbjct: 179 TVCSKTFIQSGQLVIHMRTHTGEKPYVCKA 208


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.124    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,466
Number of Sequences: 429
Number of extensions: 809
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 160
length of database: 140,377
effective HSP length: 53
effective length of query: 107
effective length of database: 117,640
effective search space: 12587480
effective search space used: 12587480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)