GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003633-TA|BGIBMGA003633-PA|IPR001841|Zinc finger,
RING-type
         (404 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   2.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   4.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   8.1  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 26 QHHESNSRESPPPNCAICLGMCQNKSFTDSCL 57
          ++H  N   S P  C  C   C NKS  +S L
Sbjct: 5  EYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHL 36


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 218 LTMVNEVISTSESDGSIDTDVAMIPNS 244
           + M N  ++TS SDGS   ++ ++ N+
Sbjct: 503 IVMANGEVATSLSDGSYFGEICLLTNA 529


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 218 LTMVNEVISTSESDGSIDTDVAMIPNS 244
           + M N  ++TS SDGS   ++ ++ N+
Sbjct: 471 IVMANGEVATSLSDGSYFGEICLLTNA 497


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)

Query: 164 LLYDITSSQFREAMR 178
           LLY+I S++FREA +
Sbjct: 346 LLYNIMSNKFREAFK 360


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 338 LKLKRSRAGGTELSDSDTDDSYQSPAXXXXXXXISNSGMMASTHRTTPEPTSTA 391
           L+L    +G    ++ D+ DS  + +        SN     S H +TP   S A
Sbjct: 245 LELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSNEHEAESEHTSTPNFLSEA 298


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.129    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,578
Number of Sequences: 429
Number of extensions: 3915
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 404
length of database: 140,377
effective HSP length: 59
effective length of query: 345
effective length of database: 115,066
effective search space: 39697770
effective search space used: 39697770
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)