GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003632-TA|BGIBMGA003632-PA|IPR001478|PDZ/DHR/GLGF
         (123 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   0.76 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   4.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 0.76
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 81   MHDKILQCNGYDFTMVTHKKAVSYIKKHPILNL 113
            M  KI    G + + + H   V ++  H ILNL
Sbjct: 1018 MQWKIWPMKGEEKSRLFHYSVVPFVSNHDILNL 1050


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)

Query: 100 KAVSYIKKHPIL 111
           K++SY+KK P++
Sbjct: 470 KSLSYLKKQPVI 481


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,237
Number of Sequences: 429
Number of extensions: 1273
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 123
length of database: 140,377
effective HSP length: 51
effective length of query: 72
effective length of database: 118,498
effective search space:  8531856
effective search space used:  8531856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)