GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003630-TA|BGIBMGA003630-PA|IPR004841|Amino acid
permease-associated region
         (480 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   1.1  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   7.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   7.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   7.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   9.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   9.8  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 282 VEMTDSDISAYTYERTLMMEQRNQMLRELRLNKRETMGMVQAIVDHHHAD 331
           V + D ++ +Y      MM++ N +      N++ T  +VQA++D +  D
Sbjct: 52  VNVEDENVQSYV---ECMMKKFNVVDENGNFNEKNTRDIVQAVLDDNETD 98


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 78 TYRKMLAFANQLKAGKGLTVC 98
          TY +++A  N+ K  + L+VC
Sbjct: 16 TYEQLVALENKFKTTRYLSVC 36


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 251 TVAQMEDNSIQMKKDLKMFLYQLRIEAEVEVVEMTDSDISAYTY 294
           T+    DN+I     + M +   +   ++E +++TDS I+A  +
Sbjct: 256 TIKYRNDNNIVRPDFINMLMELQKNPQKLENIKLTDSLIAAQAF 299


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 359 DNEEKERDDKSQCEGANSPPPEDKHSD 385
           D+++ + DD    E AN  P E   +D
Sbjct: 393 DDDDGDDDDDDDVEAANGKPAEGMLTD 419


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 460 EGLEKVLMVRGGGREVITIY 479
           EG   +L VRG G+  IT+Y
Sbjct: 134 EGKVLLLPVRGAGKSNITMY 153


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 277 AEVEVVEMTDSDISAYTYERTLMMEQRNQMLR 308
           A+  +++  ++D+S    +RT+  EQ N+M +
Sbjct: 424 AKNTIIDYRNNDLSINEEKRTIENEQLNRMYK 455


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,351
Number of Sequences: 429
Number of extensions: 5918
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 7
length of query: 480
length of database: 140,377
effective HSP length: 60
effective length of query: 420
effective length of database: 114,637
effective search space: 48147540
effective search space used: 48147540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)