GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003629-TA|BGIBMGA003629-PA|IPR000076|K-Cl
co-transporter, IPR004841|Amino acid permease-associated region
         (615 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   2.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   4.2  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 5/38 (13%)

Query: 120 LGPECGGAVG---MLFYTGTTLAAAMYIVGAVEIVLTY 154
           L P+  G +G   +L+YT TT+ AA  IVG V +++ +
Sbjct: 126 LDPKGSGRMGYRALLYYTVTTILAA--IVGIVMVLIIH 161


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 120 LGPECGGAVGMLFYTGTTLAAAMYIVG 146
           L PE G A+G + ++ T +   +++ G
Sbjct: 650 LRPESGWAIGAMSFSATGILITLFVCG 676


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.139    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,833
Number of Sequences: 429
Number of extensions: 5585
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 2
length of query: 615
length of database: 140,377
effective HSP length: 62
effective length of query: 553
effective length of database: 113,779
effective search space: 62919787
effective search space used: 62919787
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)