GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003624-TA|BGIBMGA003624-PA|IPR001132|MAD homology 2,
Dwarfin-type, IPR008984|SMAD/FHA
         (127 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   1.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 93  LLECPIWVLVINVV 106
           +L C IW L +NV+
Sbjct: 2   MLRCNIWTLAVNVL 15


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 93  LLECPIWVLVINVV 106
           +L C IW L +NV+
Sbjct: 2   MLRCNIWTLAVNVL 15


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 93  LLECPIWVLVINVV 106
           +L C IW L +NV+
Sbjct: 2   MLRCNIWTLAVNVL 15


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 41  GYSLEQEKIFKLFDMKKFQSNVNRELRRAYPDRRRLE 77
           GY LE EK  +  D+  +Q+N   +L   +  RR +E
Sbjct: 156 GYQLELEKQSEQGDVSNYQANGEFDLVN-FSARRNVE 191


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,796
Number of Sequences: 429
Number of extensions: 1458
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 127
length of database: 140,377
effective HSP length: 51
effective length of query: 76
effective length of database: 118,498
effective search space:  9005848
effective search space used:  9005848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)