GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003620-TA|BGIBMGA003620-PA|IPR001752|Kinesin, motor
region, IPR000253|Forkhead-associated, IPR000938|CAP-Gly,
IPR008984|SMAD/FHA, IPR008973|C2 calcium/lipid-binding region, CaLB
         (1655 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   9.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   9.0  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 2/19 (10%)

Query: 1160 QVVKCVILYHPH--KTIPF 1176
            Q+VKC + +HP   +T+PF
Sbjct: 113  QLVKCYVEFHPEVLQTVPF 131


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 312 SRVRLGHADRILWGNHHFFRANC 334
           + V + H   ++W +H  FR++C
Sbjct: 109 TNVIVSHTGEVVWLSHGIFRSSC 131


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 1    MTEGNKSRTVAATNMNSESSR 21
            MTEG  S   AAT+M S SSR
Sbjct: 1747 MTEGCASPPPAATSMKSVSSR 1767


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 1    MTEGNKSRTVAATNMNSESSR 21
            MTEG  S   AAT+M S SSR
Sbjct: 1743 MTEGCASPPPAATSMKSVSSR 1763


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,212
Number of Sequences: 429
Number of extensions: 15303
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 5
length of query: 1655
length of database: 140,377
effective HSP length: 67
effective length of query: 1588
effective length of database: 111,634
effective search space: 177274792
effective search space used: 177274792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)