GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003618-TA|BGIBMGA003618-PA|IPR006050|DNA photolyase,
N-terminal, IPR005101|DNA photolyase, FAD-binding, IPR008148|DNA
photolyase, class 2, IPR008149|DNA photolyase,FAD-binding, C-terminal,
IPR006051|DNA photolyase, FAD- binding N-terminal
         (510 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     28   0.16 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.85 
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    26   0.85 
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    26   0.85 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   6.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   6.0  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 0.16
 Identities = 68/325 (20%), Positives = 130/325 (40%), Gaps = 39/325 (12%)

Query: 115 LRQFHFLVKGLEKVAAECKKLNIQFHLLEGSGAEVLPQWVVDHNIGAVVCDFNPLRVPMG 174
           + ++ FL++ LE +    +KLN +  ++ G  A+ LP+   +     +  + +P   P G
Sbjct: 67  INKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDP--EPFG 124

Query: 175 WL-DGVKGKLRKD--VPLIQVDTHNVVPCWVA----SDKQEYSARTIRNKINSKLDEFLT 227
            + D     L K+  + ++Q  +H +           DK   +    +  + S +D    
Sbjct: 125 RVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVAS-MDPPEP 183

Query: 228 EFPPVIKHPYSSKFE--AEPIDWHEAIETREA----DKSVGPVDWAKPGYDEAVKMMKSF 281
             P V      S +    E  D H  + T E      + + P  W   G  EA+  ++  
Sbjct: 184 PVPTVTSACVGSAYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVWV-GGESEALARLERH 242

Query: 282 LDKRLNIYASKRNDPTQDAL----SNLSPWFHFGQISVQRVALCVQEYKSKFTESVNAF- 336
           L+++  + +  R   T  +L    + LSP+  FG +S +     + +   K  ++V    
Sbjct: 243 LERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS 302

Query: 337 LEEAIVRRELADNFCFYC-----EHYDSVKGASAWAQKTLDDHRKDKRTHIYTLEKLSKG 391
           L   ++ RE      FYC      ++D ++G     Q   D        ++  L K + G
Sbjct: 303 LHGQLLWREF-----FYCAATKNPNFDRMQGNPICVQIPWD-------KNVEALAKWANG 350

Query: 392 ETHDDLWNSAQLQLVKEGKMHGFLR 416
           +T     ++   QL +EG +H   R
Sbjct: 351 QTGFPWIDAIMTQLREEGWIHHLAR 375


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 0.85
 Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 410 KMHGFLRMYWCKKILEWTPTPEDALKYGIYL 440
           ++H ++ + W    L W P+  D + Y IY+
Sbjct: 90  ELHSWMTLMWTDSHLSWKPSDFDGINY-IYV 119


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 25.8 bits (54), Expect = 0.85
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 105 CLIS-KYLDASLRQFHFLVKGLEKVA 129
           C+++ KY+D +L +  FL   LEK+A
Sbjct: 109 CMVARKYIDCALEKMKFLDDELEKIA 134


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 25.8 bits (54), Expect = 0.85
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 105 CLIS-KYLDASLRQFHFLVKGLEKVA 129
           C+++ KY+D +L +  FL   LEK+A
Sbjct: 109 CMVARKYIDCALEKMKFLDDELEKIA 134


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 362 GASAWAQKTLDDHRKDKRTHIYTLEKLSK--GETHDDLWNSA 401
           G+ +W Q+ +D   +  R H  +L K S   G     LW  A
Sbjct: 407 GSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRA 448


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 4   ASKKRKTSIPMALGKSNESTSTIEEFLKKLQKKREETAESILNFDFNKKRIRIISQEQII 63
           A  ++   + +AL +    +  +EE ++KL ++ + T E +      +   R+ + E  I
Sbjct: 355 AGTQQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMIPKQVADRLRNGENPI 414

Query: 64  PDDCD 68
            D C+
Sbjct: 415 -DTCE 418


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,453
Number of Sequences: 429
Number of extensions: 6702
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 510
length of database: 140,377
effective HSP length: 61
effective length of query: 449
effective length of database: 114,208
effective search space: 51279392
effective search space used: 51279392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)