GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003616-TA|BGIBMGA003616-PA|IPR005552|Scramblase
         (204 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.7  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   3.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   6.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 56   GVSSLLIQQTVELDDLTSKIESENRYIVRVPNGEALYIGNEVSCPTQRCICGNG 109
            G SS +  Q V  + + ++I S   ++VR   G A    N V  PT+    G G
Sbjct: 1298 GQSSKVAAQ-VPTNRVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKGQG 1350


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 56   GVSSLLIQQTVELDDLTSKIESENRYIVRVPNGEALYIGNEVSCPTQRCICGNG 109
            G SS +  Q V  + + ++I S   ++VR   G A    N V  PT+    G G
Sbjct: 1294 GQSSKVAAQ-VPTNRVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKGQG 1346


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 4   KVFDRETGVGDRGIDNPAATDGTRAELPVTTVNWRSNPRGQFIP 47
           K  D ET V  +G D+  A DG +  +           +G  IP
Sbjct: 61  KQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIP 104


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/42 (21%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 119 NTRQEAMVLKRSQINQ---SVRVNLQKTVFQEMKVITPPGDY 157
           N    ++ +K++  N+   ++ +N++ T  +   ++TPPG +
Sbjct: 94  NCNAGSLTVKKNFANKYCGNITLNIESTSNKMTVILTPPGRF 135


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 9   ETGVGDRGIDNPAATDGTRAELPVTTV 35
           E  +G  G  +   T G+RA    TTV
Sbjct: 281 EVTIGGGGTTSSRRTTGSRAAATTTTV 307


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,876
Number of Sequences: 429
Number of extensions: 2740
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 204
length of database: 140,377
effective HSP length: 55
effective length of query: 149
effective length of database: 116,782
effective search space: 17400518
effective search space used: 17400518
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)