GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003612-TA|BGIBMGA003612-PA|undefined
         (86 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         24   0.23 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   2.2  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      21   2.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   5.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   6.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   6.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   6.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   8.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   8.7  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 0.23
 Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 2/26 (7%)

Query: 38 YDSPEKLHDITVLEEDNIGDDEDMLD 63
          YD P  ++++  +EE+NI  D +++D
Sbjct: 26 YDGP--IYELRQIEEENIEPDTELMD 49


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 53 DNIGDDEDMLDV 64
          +N+ DDED +DV
Sbjct: 23 ENLRDDEDFVDV 34


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 53 DNIGDDEDMLDV 64
          +N+ DDED +DV
Sbjct: 23 ENLRDDEDFVDV 34


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 13 IYADE-DQDLSTLETADKEEDKDKSNYDSP 41
          I+AD+ D++  +   + K  DK   NY +P
Sbjct: 38 IWADDSDEEELSARPSFKTFDKGPKNYTTP 67


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.4 bits (38), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 20  DLSTLETADKEEDKD 34
           DLS  ET+  EE+ D
Sbjct: 313 DLSESETSSDEEEAD 327


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 6.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 13   IYADEDQDLSTLE 25
            IY+  D D STLE
Sbjct: 1334 IYSSIDSDYSTLE 1346


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.4 bits (38), Expect = 6.6
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 8   SFHVKIYADEDQDLSTLE 25
           +FH ++ +  D D+S +E
Sbjct: 495 AFHSQVLSMSDYDISNIE 512


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 25  ETADKEEDKDKSNYDSPEKLHDITVLE 51
           E   + +++D+S  +S   LH    +E
Sbjct: 182 EERQRTKERDQSEVESTSSLHSDMPIE 208


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 25  ETADKEEDKDKSNYDSPEKLHDITVLE 51
           E   + +++D+S  +S   LH    +E
Sbjct: 182 EERQRTKERDQSEVESTSSLHSDMPIE 208


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.132    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,535
Number of Sequences: 429
Number of extensions: 1094
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 86
length of database: 140,377
effective HSP length: 48
effective length of query: 38
effective length of database: 119,785
effective search space:  4551830
effective search space used:  4551830
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.4 bits)
S2: 37 (19.0 bits)