GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003610-TA|BGIBMGA003610-PA|IPR008183|Aldose 1-epimerase,
IPR011013|Galactose mutarotase-like
         (226 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.19 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 1   QFGQWAF-GPQHGFARVARWHVEKMPERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRL 59
           +FG W F G Q   A     +   + +   SG  + +         +  +  +  +T+ +
Sbjct: 168 KFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIINVPAYLNTYKGDFPTETDITFYI 227

Query: 60  ILREKELHFNIGVYNPSKELTFSCQLLLH 88
           I+R K L + + +  P+  ++F C L+ +
Sbjct: 228 IIRRKTLFYTVNLILPTVLISFLCVLVFY 256


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 126 VTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWNPWSEYAK 175
           VTV  W    + N M  HI+         +++ Y +   ++ N    YAK
Sbjct: 292 VTVLGWGHTSF-NGMLSHILQKTTLNMLTQVECYKYYGNIMVNAMCAYAK 340


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 129  GEWTDRIYQNTMQEHIITNVVSGRKMRI 156
            G+W      +T+Q++ + N++ G + +I
Sbjct: 1408 GDWDTAQISSTVQKYTLENLLCGSRYQI 1435


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 81  FSCQLLLHTYFKVPDVRRCQITGMH 105
           F  +  ++ Y    +VR C++ G+H
Sbjct: 152 FHPRCAVNNYNDPSNVRNCELVGLH 176


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,913
Number of Sequences: 429
Number of extensions: 3083
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 226
length of database: 140,377
effective HSP length: 56
effective length of query: 170
effective length of database: 116,353
effective search space: 19780010
effective search space used: 19780010
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)