GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003609-TA|BGIBMGA003609-PA|undefined
         (175 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   3.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   3.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.9  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   8.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.9  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   8.9  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   8.9  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   8.9  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 30  RTKFAWRDVSNIAQEHNCLDEYD 52
           R++  W   +N     NC++ YD
Sbjct: 93  RSELPWGSCNNYWNTKNCVNPYD 115


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 144 IIHELQNDTEEQIQKNVDTIVAWIERWKEENI 175
           I+ ELQ D + ++  N  + ++   R +E+N+
Sbjct: 108 ILRELQTDYDRRLHDNSPSFLSDHSRDQEQNL 139


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 10  VLVTGTPGVGKSTL 23
           VL TGT G+G +T+
Sbjct: 143 VLDTGTIGIGNTTI 156


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 130 ATILDEAQSSYKPVIIHE 147
           A +L E +  Y P + HE
Sbjct: 348 ADVLQEEEEEYSPSVQHE 365


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 9   NVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLLDI 68
           N+  +G      +T   +L  RT       S+ ++E +C  + + EY+      +KL + 
Sbjct: 199 NIKKSGNESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258

Query: 69  MEGMM 73
            E ++
Sbjct: 259 KEKLL 263


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 9   NVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLLDI 68
           N+  +G      +T   +L  RT       S+ ++E +C  + + EY+      +KL + 
Sbjct: 199 NIKKSGNESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258

Query: 69  MEGMM 73
            E ++
Sbjct: 259 KEKLL 263


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 9   NVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLLDI 68
           N+  +G      +T   +L  RT       S+ ++E +C  + + EY+      +KL + 
Sbjct: 199 NIKKSGNESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258

Query: 69  MEGMM 73
            E ++
Sbjct: 259 KEKLL 263


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 9   NVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLLDI 68
           N+  +G      +T   +L  RT       S+ ++E +C  + + EY+      +KL + 
Sbjct: 199 NIKKSGNESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258

Query: 69  MEGMM 73
            E ++
Sbjct: 259 KEKLL 263


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 9   NVLVTGTPGVGKSTLCRNLADRTKFAWRDVSNIAQEHNCLDEYDPEYQCPFLNEDKLLDI 68
           N+  +G      +T   +L  RT       S+ ++E +C  + + EY+      +KL + 
Sbjct: 188 NIKKSGNESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDRRYEKLHNE 247

Query: 69  MEGMM 73
            E ++
Sbjct: 248 KEKLL 252


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,638
Number of Sequences: 429
Number of extensions: 2387
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 175
length of database: 140,377
effective HSP length: 54
effective length of query: 121
effective length of database: 117,211
effective search space: 14182531
effective search space used: 14182531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)